Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f15
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0135 - 21069521-21069646,21069778-21069948,21070438-210705...    28   1.8  
08_02_1216 - 25344638-25345159,25346011-25346511                       27   2.3  
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78...    27   2.3  
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     26   5.4  
03_06_0064 + 31395168-31395223,31396906-31397368,31397440-313975...    26   7.2  

>09_06_0135 -
           21069521-21069646,21069778-21069948,21070438-21070524,
           21070607-21070788,21070905-21070983
          Length = 214

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 48  VIGCIDGKLVALKRSATNKKWIYCRKEYHARNVQFVKLLIFFEILICNP*TKCVLRTYVF 227
           +IG I G  +A++   +  K I+C +EY       + LL+F+ ++I     +  +RT VF
Sbjct: 52  LIGAISGAFIAMEVVDSLAK-IWCYEEYSIATRAHLMLLVFWNLVI----DRLTVRTSVF 106


>08_02_1216 - 25344638-25345159,25346011-25346511
          Length = 340

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 60  IDGKLVALKRSATNKKWIYCRKEYHARNVQFVKLLI 167
           +DG   A +RS T ++W+ CR  +H    Q+ KL++
Sbjct: 155 LDGDFAAARRS-TKEEWVICR-IFHKVGDQYSKLMM 188


>06_01_0094 +
           779097-779155,779882-781019,781732-782115,782842-783060
          Length = 599

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 135 HDILCDSKSIFYW*QIFLRPPTSHQY 58
           H ILC   SIFYW Q+     T H Y
Sbjct: 206 HLILCSRSSIFYW-QVGTNSWTKHGY 230


>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 158 LYKLYISCMIFFATVNPFFIGSRSF*GHQLPINTPNNPKDSKFFIK 21
           LYK +     F    +P F+ +  F G  L    PN P++   + K
Sbjct: 27  LYKFFFGWFTFLLETSPIFLFAGFFLGIILAYGEPNIPENDHVYKK 72


>03_06_0064 +
           31395168-31395223,31396906-31397368,31397440-31397598,
           31397686-31397751,31397856-31397935,31397991-31398099
          Length = 310

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   NAKYCSFYEKFRILWVIGCIDGKLVALKRSATNKKWIYCRK 125
           N   CS   + ++  V G  +GK+ A +RSAT  + +Y R+
Sbjct: 187 NESNCSQVNRRKVDRVAGGGNGKVPARRRSATIAQSLYARR 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,339,121
Number of Sequences: 37544
Number of extensions: 128602
Number of successful extensions: 254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)