Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f15
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical pr...    30   0.39 
AC084197-4|AAO38575.1|  335|Caenorhabditis elegans Serpentine re...    30   0.39 
U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine rece...    29   0.68 
U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    26   4.8  
L25599-5|ABN43086.1|  337|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AF068709-6|AAC19249.1|  319|Caenorhabditis elegans Serpentine re...    25   8.4  
AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical...    25   8.4  

>Z93383-9|CAB07630.1|  281|Caenorhabditis elegans Hypothetical
           protein F54B8.10 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -2

Query: 235 YNLNT*VLNTHFVYGLHIR--ISKNINSFTNCTFLA*YSLRQ*IHFLLVADLFKATNFPS 62
           YNL+  + NT+++  L  R  + KN+  +  C  L   ++R  + FL+  D   A+ FP 
Sbjct: 55  YNLSVTIKNTYYLACLISRLFVVKNLALYLLCPTLLCSTVRATLAFLISFDKVLASIFPI 114

Query: 61  IH 56
           +H
Sbjct: 115 LH 116


>AC084197-4|AAO38575.1|  335|Caenorhabditis elegans Serpentine
           receptor, class v protein27 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 144 VQFVKLLIFFEILICNP*TKCVLRTYVFRLYSFQLNCNCV 263
           +  V L I+F ILIC    +CV +TY    YS  L  +C+
Sbjct: 18  MSIVTLPIYFTILICLIHLRCVSKTYKTTFYSLLLQ-HCI 56


>U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine
           receptor, class x protein115 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 72  LVALKRSATNKKWIYCRKEYHARNVQFVKLLIFFEILICNP*TKCVLRTYVFRLYS---F 242
           +V + RSA     +  +    +R  +  K+ I   I  C   T C+L TYV+  Y+   F
Sbjct: 189 IVKIVRSAIGLSAVMDQNVSESRKRKRRKMFIQCVIQDCTHTTDCMLNTYVYTFYAAQWF 248

Query: 243 QLNCNCV 263
           Q  C  V
Sbjct: 249 QFICGAV 255


>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -3

Query: 306 FLR*ILYFTITYSNIHNYNLTEMNTI*IHRFLI--HISFMDYIS-EFRKILIALQIVH-F 139
           FL   ++F I+   + N NLT +N + +H FL+  +  F   +   F  I + L +VH F
Sbjct: 30  FLGVDIFFVISGFLMAN-NLTNLNLLNVHDFLLFYYKRFRRILPLYFLAIFLILILVHVF 88

Query: 138 LHDILCDSKSIFYW*QIFL 82
           L D L  + + + +  +FL
Sbjct: 89  LPDFLWQNNNRYSFASLFL 107


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 137 KKCTICKAINIFRNSDM*SINEMCIKNLCIQIVF 238
           K  ++ KA+N+  N+D+   N +CI + C+ ++F
Sbjct: 196 KLLSLKKAMNL--NNDLSKTNYLCIGDACLTLIF 227


>L25599-5|ABN43086.1|  337|Caenorhabditis elegans Hypothetical
           protein F54H12.5 protein.
          Length = 337

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 294 ILYFTITYSNIHNYNLTEMNTI*IHRFLIHISFMDYI 184
           ILYF + +  +  + L  + T+ +   L+HI F+D +
Sbjct: 11  ILYFQL-FKKMSPFRLLSLPTLALKNVLLHIDFIDLL 46


>AF068709-6|AAC19249.1|  319|Caenorhabditis elegans Serpentine
           receptor, class t protein27 protein.
          Length = 319

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 168 ILIALQIVHFLHDILCDSKSIFYW*QIFLRPPTSHQYTQ*PKGF 37
           ++  +  V F   I   SK + ++    + P  +H+YT  P GF
Sbjct: 160 VIYGMYFVIFTTPIAFSSKHLTWFFNPLIFPNMTHEYTNLPHGF 203


>AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical
           protein Y41D4B.24 protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 108 WIYCRKEYHARNVQFVKLLIFFEILI 185
           W++     H R   F+ LL FF+I +
Sbjct: 60  WLFVTSRRHRRENLFMMLLAFFDIFV 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,210,594
Number of Sequences: 27780
Number of extensions: 144466
Number of successful extensions: 347
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)