Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30f13
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.9
DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin p... 30 1.9
AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin p... 30 1.9
Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical pr... 29 2.5
U00067-11|AAK20076.2| 207|Caenorhabditis elegans Regulator of c... 29 3.4
AF176115-1|AAF01683.1| 207|Caenorhabditis elegans Down Syndrome... 29 3.4
U61953-1|AAC48075.2| 569|Caenorhabditis elegans Hypothetical pr... 28 5.9
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 5.9
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 5.9
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL117204-42|CAB55146.2| 714|Caenorhabditis elegans Hypothetical... 28 5.9
AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered cut... 28 5.9
Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical
protein R11F4.3 protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 478 PGQLRYSVGPALGCAGGGRIYDFEAAWDAILASSDSSFLNEEYCIVKRLYNSRNSQSNKH 657
P ++R P+L C G + D A+ ++ N +YC+ K+ S +S + +
Sbjct: 195 PTEVRRPQMPSLICITCGEANMADPTADCSSAAEEACDANAKYCVTKQTQISTSSFAMEK 254
Query: 658 RCL 666
RCL
Sbjct: 255 RCL 257
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 480 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 346
++ D L+D+++ + HV+ E E A + S +AV NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 480 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 346
++ D L+D+++ + HV+ E E A + S +AV NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 480 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 346
++ D L+D+++ + HV+ E E A + S +AV NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 480 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 346
++ D L+D+++ + HV+ E E A + S +AV NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764
>DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin
proteoglycan-4 protein.
Length = 782
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 450 QVLSHVSEEGTERLS-EAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSG 295
++L H+SE+ TE S +GE+SG + N+ SG D GDNSG
Sbjct: 508 EILEHISEKSTEESSGSSGEMSGDGS----DNEASGEGSGEYDASGSSGDNSG 556
>AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin
proteoglycan protein 4 protein.
Length = 782
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 450 QVLSHVSEEGTERLS-EAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSG 295
++L H+SE+ TE S +GE+SG + N+ SG D GDNSG
Sbjct: 508 EILEHISEKSTEESSGSSGEMSGDGS----DNEASGEGSGEYDASGSSGDNSG 556
>Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical
protein F36H1.3 protein.
Length = 597
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 287 PKPPEL-SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDT 436
P PP + SP LP +P +P+T P +SPA + P++ T
Sbjct: 503 PAPPAIPSPAKLPTAPPPVEKPVTPSPSASPLPSPVSSPAPQLVQKPTTPT 553
>U00067-11|AAK20076.2| 207|Caenorhabditis elegans Regulator of
calcineurin protein 1 protein.
Length = 207
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 616 KRLYNSRNSQSNKHRCLHHRSLTSPGCSSVPPISW 720
+R+Y S NSQ L + L SP CS PP+ W
Sbjct: 106 QRIYMSANSQMLSPPPLEKQFLISPPCS--PPVGW 138
>AF176115-1|AAF01683.1| 207|Caenorhabditis elegans Down Syndrome
candidate region1-like protein protein.
Length = 207
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 616 KRLYNSRNSQSNKHRCLHHRSLTSPGCSSVPPISW 720
+R+Y S NSQ L + L SP CS PP+ W
Sbjct: 106 QRIYMSANSQMLSPPPLEKQFLISPPCS--PPVGW 138
>U61953-1|AAC48075.2| 569|Caenorhabditis elegans Hypothetical
protein R08C7.6 protein.
Length = 569
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 296 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 424
P++ P LPV + + S+ + + E P SD+ SVP
Sbjct: 344 PKMPPFVLPVETSVGCDNMNSVAIVHSEIDTEFRPMSDSQSVP 386
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 287 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 436
P P +P PV+ P T+ T T T + +T+P + ++ PS+ T
Sbjct: 669 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 719
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 287 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 436
P P +P PV+ P T+ T T T + +T+P + ++ PS+ T
Sbjct: 725 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 775
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 287 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 436
P P +P PV+ P T+ T T T + +T+P + ++ PS+ T
Sbjct: 548 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 598
>AL117204-42|CAB55146.2| 714|Caenorhabditis elegans Hypothetical
protein Y116A8C.4 protein.
Length = 714
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2
Query: 413 DCLKPAKFPDLTPSV*ELMTLAAAQASPG 327
D +KPA DL PSV + M L A SPG
Sbjct: 286 DKMKPAVLDDLVPSV-DFMGLVKAMISPG 313
>AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered
cuticle protein 4, isoformb protein.
Length = 730
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 534 SSTSGTTQGWSDRVSELTRVDDELIDKIQ 448
S+T T+QG RV +LT DE++++I+
Sbjct: 638 SATPATSQGVLSRVHQLTSQGDEVVERIR 666
>Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical
protein ZC410.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 603 LFI*ETRVTAG*DCIPSGFEVIDSSTSGTTQGWSDRVSELTRVDDELID-KIQVLSHVSE 427
+F+ ET VT +P+GF V +T G+T + +R ++E + L H++
Sbjct: 25 VFVPETIVTT----LPNGFRVATENTGGSTATIGVFIDAGSRYENEKNNGTAHFLEHMAF 80
Query: 426 EGTERLSEAG 397
+GT R + G
Sbjct: 81 KGTPRRTRMG 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,710
Number of Sequences: 27780
Number of extensions: 340465
Number of successful extensions: 1286
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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