Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f11
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741...    31   0.66 
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157...    29   2.7  
12_02_0437 - 19084990-19087695                                         29   3.5  
08_01_1001 + 10162020-10162433,10162851-10163102                       29   4.7  
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563...    28   6.2  
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177...    28   8.1  
07_01_0436 + 3317334-3317423,3317561-3317908,3317996-3318331,331...    28   8.1  
03_02_1029 - 13488535-13493037                                         28   8.1  

>03_02_0317 -
           7414477-7414555,7414646-7414701,7415877-7416024,
           7416376-7416380,7416512-7416594,7416707-7416878
          Length = 180

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 220 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQ 318
           M+LQW I+A  +  E AV ++LTLP     R Q
Sbjct: 1   MALQWMILACVVAAEAAVAVMLTLPAPRAVRKQ 33


>04_04_0411 -
           25014511-25015015,25015098-25015169,25015700-25015734,
           25015805-25015873,25015993-25016044,25016444-25016526,
           25016625-25016726,25017150-25017884,25017962-25018012,
           25018792-25018983,25019066-25019216,25020012-25020193,
           25020329-25020532,25020752-25020859
          Length = 846

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 217 FHYFFNTVISYTMQQTIVEEQQTMTKFLGQE 125
           FH+FF T IS T Q+ ++   +T+ KF+  E
Sbjct: 157 FHHFFRT-ISNTHQENVITSMETVMKFVIDE 186


>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 425 RCKNIQILNRQTTSISTPKCKVT-*DCFVHRETSTYLALHFSSLSSSVVWFK*FH 586
           R KN+Q L+ + TS+S   C++T   C  H   ST   L+ +S S +V   +  H
Sbjct: 626 RLKNLQTLHLRRTSVSELPCEITLLACLRHLSVST--DLYGTSFSGNVYGLRSLH 678


>08_01_1001 + 10162020-10162433,10162851-10163102
          Length = 221

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = -1

Query: 366 RCLPAYVS*KFRFEELLPSARTGYRQS*KEDDCDLGIEKRRDNCPLQTHDFTISLTPLLA 187
           RCLPA        EE      +G  Q  KE   DLG  KRR       HD  + L  ++A
Sbjct: 26  RCLPA-------IEEKRKQQCSGNEQEGKEGRNDLGFRKRRRCWKQDDHDMAMKLNLVVA 78

Query: 186 IQ 181
            Q
Sbjct: 79  EQ 80


>03_05_0472 -
           24655384-24655764,24655904-24656119,24656197-24656321,
           24656432-24656621,24656817-24656911,24657230-24657454,
           24657940-24658003
          Length = 431

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 518 FLCARNNLMLPCISASRCWWSDGSIFE--YFCISRIASSRHNTSTPMR 381
           F+CA     +P +SA R W    ++F   Y  I+ + S R   +TP +
Sbjct: 151 FVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGITTPAK 198


>09_04_0736 -
           19815427-19815642,19815782-19816903,19817006-19817707,
           19817808-19817855,19817959-19818201,19819035-19819391
          Length = 895

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 430 QKYSNIEPSDHQHLDAEMQGNMR 498
           ++YS I PS++ H DA+ +G++R
Sbjct: 594 RRYSMITPSNNHHRDADHRGSLR 616


>07_01_0436 +
           3317334-3317423,3317561-3317908,3317996-3318331,
           3318384-3318442,3318640-3318709,3319259-3319579
          Length = 407

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 273 DCDLGIEKRRDNCPLQTHDFT-ISLTPLL 190
           DC   +EK   NC L T DFT  S+TPL+
Sbjct: 221 DCCPVLEKIEMNCDLATLDFTGSSMTPLI 249


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 243 RDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSL 347
           R V+LYR   +P   FA   S + +E+ QIE+S +
Sbjct: 494 RTVTLYRGPEQPVVFFAPPTSVRSSELHQIELSEI 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,527,205
Number of Sequences: 37544
Number of extensions: 307953
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)