Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30f09
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 95 1e-20
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 89 6e-19
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 89 8e-19
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 87 2e-18
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 86 4e-18
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 56 4e-09
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 32 0.094
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 29 0.50
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.5
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 26 6.1
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 25 8.1
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 94.7 bits (225), Expect = 1e-20
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 1/177 (0%)
Frame = +3
Query: 159 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 338
LYI+G++ S T W E +P+ EVI +V A + E+ A+ +AK A+KTW K +
Sbjct: 23 LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80
Query: 339 QQLMFKFARLLRENQSKLAAKITEEQGK-TIADAEGDVLRGIQSVEHCCSITSLQLGDSI 515
+L+ K A L ++ LAA + GK +++A GDV I + +C G I
Sbjct: 81 GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVI 140
Query: 516 QNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPWS 686
+ + ++ + P+GV G + +N+P+ + W PAL GN IIK +E P S
Sbjct: 141 PTGPEKL-AYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLS 196
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 89.0 bits (211), Expect = 6e-19
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Frame = +3
Query: 162 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 341
++ G+++ S E+ NPAT E+IG+V + + +E A+ AA A+KT+ T + R
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80
Query: 342 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 521
QL+ ++A L+ EN+ L +T E GK ++ AE +V ++ + GD +
Sbjct: 81 QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVAPS 140
Query: 522 IAKDMD-THSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPW 683
+ + S K P+GV + +NFP + AL G T I P+ + P+
Sbjct: 141 SLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPY 195
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 88.6 bits (210), Expect = 8e-19
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Frame = +3
Query: 144 APTTKLYIDGQYVD--SKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 311
AP L+IDG++V I L NPAT E+IG A+ ++ SA++ A +++
Sbjct: 18 APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77
Query: 312 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSIT 491
W+K R ++ K A+++RE + LA T GK A D+ E+ +
Sbjct: 78 WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVA 137
Query: 492 SLQLGDSIQNIAKDMDTHSY--KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKP 665
+ + ++ + P GV+G + +NFP+ + LW PA+ +GN ++KP
Sbjct: 138 ETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKP 197
Query: 666 SEQDPWS 686
SE PWS
Sbjct: 198 SELAPWS 204
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 87.4 bits (207), Expect = 2e-18
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 3/179 (1%)
Frame = +3
Query: 159 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 329
L+I+ Q+VDS +++ +P+T ++I V +A ++++ A+ A+ A++T W K +
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 330 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGD 509
R + + + A + +N LA+ T + GK+I A GDV + G
Sbjct: 85 AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQ 144
Query: 510 SIQNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPWS 686
+I+ K ++ P+GV G + +NFP ++ W PA+ GNT I+K +E P S
Sbjct: 145 TIETDIKRF-AYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLS 202
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 86.2 bits (204), Expect = 4e-18
Identities = 47/175 (26%), Positives = 87/175 (49%)
Frame = +3
Query: 162 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 341
YI G++V + + ++ NP NE + V + + +E A+ A A+ ++ S + R
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKERY 86
Query: 342 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 521
++ ++ L+ EN LA +T E GK + DA+G+V+ + ++ GDS +
Sbjct: 87 AILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSSMS 146
Query: 522 IAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPWS 686
+ K P+GVVG + +NFP + AL G T +I+P+ + P++
Sbjct: 147 SNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFT 201
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 56.4 bits (130), Expect = 4e-09
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Frame = +3
Query: 219 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 398
P ++G V + ++ ++ A+ A K W ++ R+ + + NQ K A
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 399 KITEEQGKTIADAE-GDVLRGIQSVEHCCSI--TSLQLGDSIQNIAKDMDTHSYKV-PLG 566
++ GKT+ DA G++L ++ + + SL+ ++ K PLG
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPTKRPNSLLTSYKGGYVKYEPLG 129
Query: 567 VVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPWS 686
V+ + ++N+P+ L AL GN ++K SE WS
Sbjct: 130 VIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWS 169
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 31.9 bits (69), Expect = 0.094
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 213 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 338
T+ TNE++ ++ E +D L +L A+K YK WS+ L R
Sbjct: 5 TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.50
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 177 YVDSKTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 305
Y ++T W+EL NPA EV G + E + E T+++ A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 552 KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 656
K +GVVGG +P P+ P ++TGN +
Sbjct: 291 KGQVGVVGGYPVMGYPPPSPVLQKPDLIMTGNRTV 325
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -1
Query: 701 IIMSVAPGILLRRLDYTRVSGYQRWREHP 615
+++S+ PG L + + + +RW++HP
Sbjct: 217 LLLSLRPGTKLGNVRFHQSVNLKRWKQHP 245
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 189 KTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT 311
KT NW ++TNP V + + EL ++ Y+T
Sbjct: 252 KTLNWYQVTNPTETLSEYSVEDIPESELNEMKLRHRKRYET 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,349
Number of Sequences: 5004
Number of extensions: 59242
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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