Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f06
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 191 NVILFVGDGMGPNTVTATRIYKGGESHRLVYEKF 292
           N+++      G +T T   IYK G   +   EKF
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 191 NVILFVGDGMGPNTVTATRIYKGGESHRLVYEKF 292
           N+++      G +T T   IYK G   +   EKF
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 42


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 693 CLPPPRITCKS 661
           CLP PRI  KS
Sbjct: 47  CLPAPRINSKS 57


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 693 CLPPPRITCKS 661
           CLP PRI  KS
Sbjct: 47  CLPAPRINSKS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,534
Number of Sequences: 438
Number of extensions: 4539
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)