Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f04
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    70   4e-13
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    28   1.5  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   2.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   7.9  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
 Frame = +1

Query: 202 FSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVY 381
           F   N +  +A+LA YP   +  A++PLLDLAQRQ G W+P +AM+++A +  +    V+
Sbjct: 7   FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVH 66

Query: 382 EVATFY-TMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGK--FS 552
            +   Y   F  RP  K  V++C +  C     +      +  +N +    S   K  F 
Sbjct: 67  SLILAYPNDFFWRP-KKPRVRICNSWMCQQAAEE------QGNSNWDSQCRSVATKYGFD 119

Query: 553 VSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKL 666
           V    CLG C   P + +ND  Y   + E   +I+  L
Sbjct: 120 VENTGCLGNCFQGPAMWINDKIYGVNTKEKLVDIMEAL 157


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 491 MQLNRKQTVKLEATVLVASFLFQRLN 568
           MQ++  +TV+L  T+  A+ L QRLN
Sbjct: 201 MQIHANKTVQLSQTIQKATLLLQRLN 226


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 112 RSIQTTASRQHDS-LFVHRDTPEDNPSIPFEFSQANQKRV-EALLAIYPEGHKRGAMIPL 285
           R +   A++QH + + +H   P    + P +     + RV EA+L  YP+G    A + L
Sbjct: 203 RELTVRAAKQHGARVLIH---PVVGMTKPGDIDHFTRVRVYEAILQRYPKG---SAKLSL 256

Query: 286 LDLAQRQSG 312
           L LA R +G
Sbjct: 257 LPLAMRMAG 265


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 445 CTTTPCWLRGSDAILNAIKQETNCEVGGN 531
           C T   W+ G  A+  A   + NCE G N
Sbjct: 508 CETGKSWMYGGMALRMAAALQLNCEQGSN 536


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 457 PCWLRGSDAILNAIKQETNC--EVGGNSP 537
           PCWL+      +A+K  + C  E+G +SP
Sbjct: 477 PCWLKIQQPNFDAVKNASWCRVEIGCSSP 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,612
Number of Sequences: 5004
Number of extensions: 65680
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)