Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30f04
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152... 195 3e-50
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 36 0.041
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 31 1.2
11_06_0617 - 25552308-25552978,25553384-25553454,25553691-255537... 29 2.7
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 29 3.5
12_02_0129 - 13981684-13982529 29 4.7
12_02_0112 + 13783758-13784717 29 4.7
08_01_0414 + 3684491-3684589,3684770-3684838,3685004-3685033,368... 29 4.7
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 28 8.2
08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444 28 8.2
>05_06_0024 +
25014274-25014375,25014655-25014720,25015117-25015233,
25015757-25015834,25015911-25016016,25016150-25016196,
25016386-25016463,25016898-25016963,25017102-25017165,
25017406-25017428
Length = 248
Score = 195 bits (475), Expect = 3e-50
Identities = 95/216 (43%), Positives = 139/216 (64%), Gaps = 10/216 (4%)
Frame = +1
Query: 76 RTGVQGLWRISSRSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPE 255
R + L +++ S +A+ + S H D+PE+NP +P+EF++AN K+V +L+ YP
Sbjct: 7 RLAARRLLGLATSSASESAAARRLSRSPHLDSPENNPDMPWEFTEANMKKVNEILSHYPS 66
Query: 256 GHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYH 435
+K+ +IP+LDLAQ+Q GGW+P++AM+ +A+I+ + +RVYEVATFYTMF R +GKYH
Sbjct: 67 NYKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYH 126
Query: 436 VQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVND- 612
+ VC TTPC +RGS I A+ + + + G FSV E+EC+G CVNAPMI V D
Sbjct: 127 LLVCGTTPCMIRGSREIEEALLEHLGVKRNEVTSDGLFSVGEMECMGCCVNAPMIAVADY 186
Query: 613 ---------DYYEDLSVEDTKEIISKLKKDEKPKPG 693
+YYEDL+ + EI+ LK+ E P G
Sbjct: 187 SKGSEGYTYNYYEDLTPKRVVEIVEMLKRGETPPRG 222
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 493 AIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY--YEDLSVEDTKEIISKL 666
A+K EV G+ P G F + + + P I +ND Y +E ED +E+ +L
Sbjct: 229 AVKSSETSEVKGSLPEGFFDNKDADLRARGIQPPKIDINDAYKEFEKEIQEDLQEVDDRL 288
Query: 667 KKDE 678
+++E
Sbjct: 289 EEEE 292
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -2
Query: 574 PNIQPLKQKTCHKDCCLQLHSLFPV*LHSIWHQSLEASKE*SYILEHGIYQLV 416
PNI P+ DCC LH P L +I H S EA + + IYQ++
Sbjct: 543 PNILPVLGIVETYDCCYMLHPKSPYTLENIMHYSPEALWS-DWHIRFLIYQII 594
>11_06_0617 -
25552308-25552978,25553384-25553454,25553691-25553727,
25553807-25553927,25554309-25554428,25554834-25555130,
25555286-25555288
Length = 439
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 304 VVVPDPVKESWHLACDLQGKWPTKPLLSFD 215
VVV D V +S HLA + G W + P FD
Sbjct: 313 VVVADVVMDSVHLAIEFTGNWSSHPDDHFD 342
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 433 HVQVCTTTPCWLRGSDAILNA-IKQETNCEVGGNSP 537
H+ C +TP W R SD LN KQ+ + E G +P
Sbjct: 289 HMITCPSTPEWKRSSDLDLNGEAKQDDDDENGDLAP 324
>12_02_0129 - 13981684-13982529
Length = 281
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 100 RISSRSIQTTASRQHDSLFVHRDTPEDN 183
R++ R + + A R HD+ +HRD DN
Sbjct: 81 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 108
>12_02_0112 + 13783758-13784717
Length = 319
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 100 RISSRSIQTTASRQHDSLFVHRDTPEDN 183
R++ R + + A R HD+ +HRD DN
Sbjct: 119 RVAMRQLLSGAKRMHDAGLMHRDLKPDN 146
>08_01_0414 +
3684491-3684589,3684770-3684838,3685004-3685033,
3685540-3685596,3685884-3685954,3686185-3686266,
3686470-3686559,3686647-3686685
Length = 178
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 631 SVEDTKEIISKLKKDE 678
++EDTK++ISK KKDE
Sbjct: 111 NIEDTKQMISKAKKDE 126
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 457 PCWLRGSDAILNAIKQETNC-EVGGN-SPCGKFSVSEVECL 573
PC + +A I C E+G + SPCG+F V+ V CL
Sbjct: 451 PCAVLAPEACCLTISHAVLCSEMGTHFSPCGRFLVACVACL 491
>08_02_0633 + 19540584-19541383,19541557-19541610,19542123-19542444
Length = 391
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 684 GLLVLL*FADNFFCIFYRQVLIVIIIDLYHWGVH 583
GL +LL A F CI Y+ LI+I++ L H G+H
Sbjct: 344 GLSLLLANAFLFECIQYQLHLILILLVLDHSGLH 377
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,056,918
Number of Sequences: 37544
Number of extensions: 441225
Number of successful extensions: 1073
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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