Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f04
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical pr...   247   7e-66
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical ...    29   4.2  
U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    28   7.4  
AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical
           protein F53F4.10 protein.
          Length = 239

 Score =  247 bits (604), Expect = 7e-66
 Identities = 110/182 (60%), Positives = 142/182 (78%)
 Frame = +1

Query: 151 LFVHRDTPEDNPSIPFEFSQANQKRVEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPIS 330
           L VHRDT E+N ++ F+F+  NQ+R++A++ IYPEGHK GA+IPLLDLAQRQ G WLPIS
Sbjct: 27  LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPIS 85

Query: 331 AMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQET 510
           AMH+VA+IL +P+MR YEVATFYTMF R+P+GKY +QVC TTPC LRG++ I   I+++ 
Sbjct: 86  AMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETIEKKL 145

Query: 511 NCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKKDEKPKP 690
               G  +  G F+++EVECLGACVNAPMIQ+NDDY+EDL+ +D  EI+  LK   KP  
Sbjct: 146 GIHAGETTKDGLFTLAEVECLGACVNAPMIQINDDYFEDLTPKDVNEILDDLKAGRKPAA 205

Query: 691 GP 696
           GP
Sbjct: 206 GP 207


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 250 PEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTM 405
           P+  +R A+   L LAQ   G W+  S +       ++P++  Y +AT  TM
Sbjct: 162 PDMKRRMALATTLLLAQGGIGWWMVKSGLDPSKNSSDVPRVSQYRLATHLTM 213


>AC024807-3|AAK84614.1|  252|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.3 protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 442 VCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDY- 618
           VC ++P  L     +  +I+   + + G N      S  +    GAC+  P I  +  Y 
Sbjct: 84  VCVSSPPPLSHHSYLETSIETSKSEQCGANRKTTSMSFQKSFVTGACLTYPFIGQSLTYR 143

Query: 619 -YEDLSVEDTKEIIS 660
             EDL+ +D  +I++
Sbjct: 144 NQEDLAAQDYSKIMT 158


>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 418 PIGKYHVQVCTTTPCWLRGSDAILNAIKQETNC 516
           P+  YH+ +CTT     +G   +++   +ET C
Sbjct: 184 PLNIYHMPICTTIGLLDKGQIVVIDPTDKETAC 216


>AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical
           protein Y32G9A.5 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 83  EYRACGVYPLGQFRPQHQGNMTVYLST 163
           +Y     YPLG   PQ+ GN   + ST
Sbjct: 227 QYLGSSQYPLGSDAPQYPGNYNAFAST 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,936
Number of Sequences: 27780
Number of extensions: 377561
Number of successful extensions: 994
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)