Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f02
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    29   0.74 
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   5.2  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   6.9  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   6.9  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   9.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   9.1  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    25   9.1  

>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 615 PGISKLHFASQAS*FLRVLLKCLQCKSRAQIQIYSTKN 728
           PG+S+++F   A+ FL  + +C++ ++   + + S+KN
Sbjct: 580 PGVSRVYFPPDANCFLATVARCMKSENTINLMV-SSKN 616


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 74  LPLCNRILLDIISINHSLEKKTKMFGLRASVMKSAIIVPTMFSQQTRNTFILRRRWPPPL 253
           LP   R  L   ++N ++    K+ GLR SV  S  +       +T ++  ++    PP+
Sbjct: 182 LPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPI 241

Query: 254 HK 259
           +K
Sbjct: 242 YK 243


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +2

Query: 239 WPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGV 379
           W P L      V K  G  FVYD++   S  K   +  + N   E V
Sbjct: 279 WKPVLETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQV 325


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 335 KPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILPG 445
           +P+  I+LN  ++   + G V    L+ +  NFI PG
Sbjct: 470 EPETGIILNDHMDDFASPGIVNAFGLSPSPYNFIAPG 506


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 299 VYDLVEDTSVKKKPDIRIVLNQFVEGV 379
           V DL+   ++K++P + I +N  V+G+
Sbjct: 87  VRDLIYQNALKQQPTLGIFMNPLVQGI 113


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 192 VGTIIADFITEARSPNIFVFF--SSEWLILIISNKILLHNGRKVSEEKIKNNTFQPQFSI 19
           +G  ++ FI +      +VF+  S+ W+I ++   ++L     VSE K + N      SI
Sbjct: 297 LGPSLSGFIVQYTPHMYYVFYITSTFWIIYLLYVWLILPESLDVSESKEQQNKISGFSSI 356

Query: 18  Y 16
           +
Sbjct: 357 W 357


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 642 LRNEALRCQGCRVHGSELLIVTRSTNLCKQSIVLFTNGEL 523
           L +EAL+  GC++H S   I +R  N C  S +     ++
Sbjct: 4   LLHEALQ-NGCKLHKSVEFIQSRDDNACFGSYIAVAQNDI 42


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 305 DLVEDTSVKKKPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILPGLAVYANPENLEKY 484
           D+V D S+ +  D   ++     G+    DVL       ++N + PG  V  +P+ +  +
Sbjct: 17  DIVNDVSMTEMEDE--IMEDEQMGLVDGEDVLEEFDKSIHQNLVTPGQLVTDDPQFMRGH 74

Query: 485 KTY 493
            TY
Sbjct: 75  GTY 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,048
Number of Sequences: 5004
Number of extensions: 66984
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)