Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f02
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    35   0.063
02_05_1266 - 35339279-35339332,35339426-35339519,35339622-353396...    31   1.0  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     29   5.4  
07_03_0544 + 19309026-19310105                                         29   5.4  

>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
            1178179-1178378,1178505-1178605,1178747-1179369,
            1179451-1179546,1179637-1179798,1179889-1180068,
            1180173-1180323,1180408-1180641,1180753-1180913,
            1181041-1181163,1181261-1181421,1181655-1181877,
            1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 194  MFSQQTRNTFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTS 325
            MF++QT N   LRR+WP P ++   +      + FVY +  +TS
Sbjct: 1796 MFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTS 1839


>02_05_1266 -
           35339279-35339332,35339426-35339519,35339622-35339669,
           35339739-35339851,35340121-35340166,35340517-35340644,
           35341312-35341434
          Length = 201

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 329 KKKPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILP-GLAVYANPENLEKYKTYEKR 502
           K K   +++L   +  VG  GD L +     Y NF+LP G A    PE L++ +  ++R
Sbjct: 35  KVKKYRQVILTDDIAEVGKKGDTLKVRAG-FYRNFLLPKGKATLLTPEVLKEMQVEQER 92


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 323 SVKKKPDIRIVLNQFVEGVG 382
           SV ++PDI+ +LN   EGVG
Sbjct: 204 SVSQRPDIKKILNDIAEGVG 223


>07_03_0544 + 19309026-19310105
          Length = 359

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 684 GGISIALSGTTKPDLRNEALRCQGC 610
           GG + A +G   PD R EALRC  C
Sbjct: 30  GGGAAAAAGAGAPDPRAEALRCPRC 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,705,360
Number of Sequences: 37544
Number of extensions: 398073
Number of successful extensions: 1020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)