Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30f02
         (772 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   2.0  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    24   4.5  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   4.5  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -2

Query: 198  NIVGTIIADFITEARSPNIFVFFSSEWLILIISNKILLHNGRKVSEEKIKNNTFQPQFSI 19
            ++ GT++   +   +SP      +S W+ L   +K L  +  + S  +I  N+ Q Q + 
Sbjct: 863  DVHGTVVLSCVNCIKSPKAVSVLNSRWIPLNKIHKKLALSTEESSINEILMNSIQEQINY 922

Query: 18   Y 16
            +
Sbjct: 923  H 923


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 686 LEAFQ*HSQELRSLTCEMKL*DARAVESMVQNCSLLHE 573
           LE  +   Q L    C MK  +A+ +E +   C LL E
Sbjct: 117 LELLRATIQRLEEQNCAMKEQNAKLLEQITGMCQLLQE 154


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 476 EKYKTYEKRPLEENTHSSPFVK-RTMD 553
           EK KTYE   +   T S+PF+  RT++
Sbjct: 820 EKIKTYELNTITYGTASAPFLAIRTLN 846


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,680
Number of Sequences: 2352
Number of extensions: 16622
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80249979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)