Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e23
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     29   0.56 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    28   1.7  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    28   1.7  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    28   1.7  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    27   2.2  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.0  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   9.1  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   9.1  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
 Frame = +3

Query: 333 NYPVLVPNLK---GYETAKQCNVEEIAIFPAGSEGFSQKNLNC-----SVEEGLRRFKQV 488
           ++P+ V  L+    Y      N E ++  P   +GF+   LNC     S+      ++++
Sbjct: 532 HFPLFVTMLRIKDPYRIPSGLNFEIVSFEPLKQDGFATLYLNCNSKPMSLGSMFEHYRKL 591

Query: 489 ADEAVRDGLRVRGYISCVVGCP 554
           A   +   L     IS +VGCP
Sbjct: 592 ARRLISHYLSKTTLISLLVGCP 613


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/51 (23%), Positives = 30/51 (58%)
 Frame = +3

Query: 204 LISKIVAAGIKNVESASFVSPKWVKQMSDSVDVMKNIQRVPGVNYPVLVPN 356
           ++++++    ++  S+++V   + K  S +VD +K +    G+NY + +PN
Sbjct: 96  ILTRLLPYLYESTNSSNWVRTYFQKDFSQTVDDLKPLLSELGLNYEIELPN 146


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = +3

Query: 207 ISKIVAAGIKNVESASFVSPK---WVKQMSDSVDVMKNIQRVPGV 332
           +S I  +G  N+E  SF+S +    ++  +DS+ V+KNIQ+VPGV
Sbjct: 726 LSYIENSGFTNLEK-SFLSEESHCGLESKTDSL-VIKNIQKVPGV 768


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 644 DWSRHGRLRPPTSS*NPHCRKTGTTS 721
           +W R  R+ PP  +  PH  +T T S
Sbjct: 477 EWRRRYRVAPPAENEKPHTSRTNTAS 502


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 498 AVRDGLRVRGYISCVVGCPYDGPIHPKNIAKITE 599
           AV + +R RG  + V GC Y G   PK++ ++ E
Sbjct: 210 AVMEKIRKRGVCNSVEGCLYSG--SPKSVKRVRE 241


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 31/126 (24%), Positives = 46/126 (36%)
 Frame = -2

Query: 641 ITKRYFITAHRNQLFCYLSNIFRVNRSIVGTTNNT*NISPYSQAVTNGLVRDLFKSSKTF 462
           +TK Y  T      F Y    F   RS     NNT   SP  ++ +          S  F
Sbjct: 22  VTKSYTHTRTGTSFFMYQKEAFYRGRSSTRQFNNT--RSPSGRSASR---------SSNF 70

Query: 461 FHRAI*IFL*KSFRTSRKYSNFFYVALFSCFISFQIWNKYRVIHSRHSLNIFHNINTVTH 282
            HR+       SF ++R YS+    +      +  + N  R +   H   IF     + H
Sbjct: 71  SHRS---SSRDSFSSNRSYSSSLSRSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDH 127

Query: 281 LFNPFW 264
           +F P +
Sbjct: 128 IFMPIY 133


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 737 VMEVKG*LFRFCDSEDFMKKSADGAGRAYS----NRITKRYFITAHRNQLFCYLSNIFRV 570
           ++E    L +FC++E F+K+ A  A   Y      R+T R++  A R  +  +L +  R+
Sbjct: 359 ILEKDPSLSQFCENEGFIKRLAKKAKNFYEICPPERLT-RFYSRASRETIIDHLYDSLRL 417


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 398 FFYVALFSCFISFQIWNKYRVIHSRHSLNIFHNIN 294
           FF +ALF  F  F I+  +R +H R      H ++
Sbjct: 152 FFSIALFLLFSDFLIYWIHRALHHRWLYAPLHKLH 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,322
Number of Sequences: 5004
Number of extensions: 69322
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)