Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e15
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    93   3e-20
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom...    73   5e-14
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    31   0.20 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    31   0.20 
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    29   0.46 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    29   0.61 
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    27   1.9  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   3.3  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   3.3  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   4.3  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   5.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.6  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.6  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   10.0 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   10.0 

>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 8/178 (4%)
 Frame = +3

Query: 162 KMTMDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFK 341
           K T    P+ T+Y                L  +F  +G+++D+ A KTL+MRGQAFV+F 
Sbjct: 17  KETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFD 76

Query: 342 EISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQ-ERPKRXXXXXXXXXXXX 518
            + +A+ AL+ +QG+P Y KPM IQYSK  SDII + +   + E  K+            
Sbjct: 77  NLENASRALKDLQGYPLYGKPMMIQYSKSKSDIIVQRESPEEIETRKKDRKNRREMLKRT 136

Query: 519 XXXXXXSRLIGHGIP------GAGILNNVNAE-QPPNQILFLTNLPDETSEMMLSMLF 671
                 +    H  P      GA   + +N +  PPN++L L N+P E +  +L+ +F
Sbjct: 137 SALQPAAPKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIF 194


>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 32/68 (47%), Positives = 51/68 (75%)
 Frame = +3

Query: 246 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 425
           +LY +FS +G ++DIVA+KT KMRGQA V+F + S+A +A+++++ F F+ K M+IQY+ 
Sbjct: 23  ALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYAH 82

Query: 426 IDSDIIAK 449
             S II +
Sbjct: 83  SKSKIIER 90


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 249 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKI 428
           LY+IF  +G++  +    T+     A + F  + SAT AL  M GF +      ++Y  +
Sbjct: 179 LYSIFRTYGKLRSV----TINSPTSATLSFSSLRSATSALNCMHGFVYGKTEFHMRYRHM 234

Query: 429 DSDIIAK 449
           +  +  K
Sbjct: 235 NRFVAFK 241


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 300 KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPK 479
           K L M G  FV FK+ +SA  A+ +M GF      + I+ S    D  A+ +     +PK
Sbjct: 661 KYLSM-GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK 719


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 558 IPGAGILNNVNAEQ-PPNQILFLTNLPDETSEMMLSMLFN 674
           IP +   N   A+Q PP   +++ NLP  TSE  L +LF+
Sbjct: 408 IPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFS 447


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 261 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 416
           F+QFG++LD   M    T + RG  FV + E  SA  A  S      + KP+ ++
Sbjct: 267 FNQFGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVK 320



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 246 SLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFK 341
           SL   F QFG++LD   M+   T + RG  F+ FK
Sbjct: 178 SLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 249 LYAIFSQFGQILDIVAMKTLKMRGQ---AFVIFKEISSATVALRSMQGFPFYD 398
           L +I+S FG + ++V  K +    +   + ++F+ +SSA  A+ + +    YD
Sbjct: 184 LRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEKPSKIYD 236


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 343 KFQVPLLLCGACKD 384
           KF +P ++CGACK+
Sbjct: 65  KFHIPCVICGACKN 78


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 324 AFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKI 428
           AF+ F+   SA  A+ S+ G  F    ++++Y+ I
Sbjct: 69  AFITFENKCSADNAIASLNGSSFQGNTLKVEYTHI 103


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 327 FVIFKEISSATVALRSMQGFPFYDK---PMRIQYSK 425
           FV F+E+  A  A+  MQG    DK    +R+ YSK
Sbjct: 643 FVEFEEVCHAAKAMEKMQGAALDDKIKGGIRLSYSK 678


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 255 AIFSQFGQILDIVAMKTLKMRGQAF--VIFKEISSATVALRSMQGFPFYDKPMRI 413
           AIF  FG I  +   +  + R + F  + ++   SA  AL  M GF    + MR+
Sbjct: 358 AIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 315 RGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 413
           RG  FV F + +    AL  MQG    D+P+R+
Sbjct: 228 RGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 554 MPNKSARIFVFLFLPIISTFR*LWTFRSFLKCSFTFC 444
           +P+    + VF  +P+I+T   L  F +F    F FC
Sbjct: 31  IPSLCCSLAVFPSIPLINTHSNLCLFSNFSHSCFLFC 67


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 184 PTIPFISIISMKRLKKKN*RSHFMQYFHNLVKY-WI 288
           P+I FI+I S + + KK      ++YFH ++ + W+
Sbjct: 183 PSISFINIRSWRTIPKKWCVLQVLRYFHRILGHLWL 218


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 246 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVAL 368
           SLY +   +    + + +KTL      +++ K++S   VAL
Sbjct: 306 SLYTLHQVYTATSESINIKTLSSTTPEYILLKKLSETIVAL 346


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = +3

Query: 270 FGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAK 449
           FG+   I  +K L  +  AFV F  I  A   +R++   P Y    RI +    SD  A 
Sbjct: 319 FGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSCDPDYHS-WRIFFG---SDRCAN 374

Query: 450 SKGTFQER 473
              +F ER
Sbjct: 375 HPPSFDER 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,506
Number of Sequences: 5004
Number of extensions: 51746
Number of successful extensions: 159
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)