Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30e15
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 122 3e-28
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 120 1e-27
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 39 0.004
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.020
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 33 0.25
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 1.7
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 1.7
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 1.7
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 1.7
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 1.7
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical ... 29 3.0
U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical pr... 29 4.0
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 28 7.0
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 28 7.0
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 28 7.0
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 28 7.0
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 28 7.0
Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z68115-7|CAA92169.2| 302|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50873-4|CAA90762.2| 302|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z37983-10|CAA86060.4| 267|Caenorhabditis elegans Hypothetical p... 27 9.2
DQ645955-1|ABG36763.1| 302|Caenorhabditis elegans molting prote... 27 9.2
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 122 bits (293), Expect = 3e-28
Identities = 62/167 (37%), Positives = 94/167 (56%)
Frame = +3
Query: 174 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 353
DI PNHTIY SL+ +F+QFG+I+ +++ + KMRGQA ++FKE+SS
Sbjct: 3 DINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSS 62
Query: 354 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXXX 533
A+ ALR++QGFPFY KPMRIQY++ DSD+I+++KGTF E+ ++
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAKNGK 122
Query: 534 XSRLIGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFN 674
+ P + PN ILF +N+P+ T + +F+
Sbjct: 123 SA-----AEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFS 164
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 120 bits (288), Expect = 1e-27
Identities = 65/167 (38%), Positives = 94/167 (56%)
Frame = +3
Query: 174 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 353
++ PN T+Y SL A+F QFG+I+ ++ +TLKMRGQA VIFKE+ +
Sbjct: 3 EVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPA 62
Query: 354 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRXXXXXXXXXXXXXXXXX 533
A+ A ++ GFPFY+KPMRIQ+++ DSD++A+ KGT+ +R +
Sbjct: 63 ASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPK-------YLSEKILKKP 115
Query: 534 XSRLIGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFN 674
SR +G G PPN+ILF TNLPD + ML ++FN
Sbjct: 116 KSRKKENGGDGPA---------PPNKILFCTNLPDSATAEMLEIMFN 153
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 249 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 419
+Y IF +FG + I T + RG AFV++++I A A + G+ ++ + + Y
Sbjct: 35 MYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVVLY 91
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 255 AIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 425
A+FSQ+G++++I ++ T K +G AF+ +K+ S +A+ + G + + +R+ +
Sbjct: 56 AVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDH-- 113
Query: 426 IDSDIIAKSKGTFQERPKR 482
++ + K K + KR
Sbjct: 114 VEEYKVPKYKEDADDETKR 132
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 261 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 413
FS GQI ++ + +T + RG AF+ F E SA A+ M G F +P+R+
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRV 78
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 249 LYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 419
L+ +FSQFG I+++ ++ T + +G AFV + A A+ S+ G K +++ +
Sbjct: 390 LWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVF 448
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 261 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 371
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 261 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 371
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 261 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 371
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 261 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 371
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 261 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALR 371
+SQFG+I DI+ M+ T + RG FV F + A++
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = -1
Query: 545 KSARIFVFLFLPIISTFR*LWTFRSFLK-----CSFTFCYYITINF*I-LNSHWFIIEWK 384
K+ F+F FLP+I F+ ++ F SF+ S TF +NF + LN I E K
Sbjct: 19 KTPSHFLFCFLPLILFFKMVFLFCSFINNQMMVLSVTFRTLTQVNFNLELNEDQTIAEVK 78
Query: 383 SLHAPQ 366
+L A +
Sbjct: 79 ALVASE 84
>AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical
protein T15B7.7 protein.
Length = 457
Score = 29.1 bits (62), Expect = 3.0
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = -1
Query: 569 STRDTMPNKSARIFVFLFLPIISTFR*LWTFRSFLKCSFTFCYYITINF------*ILNS 408
++++TM +KSA F LFLP +FR +RSF+ +T++F N+
Sbjct: 46 NSQNTMFHKSA--FHTLFLPTTVSFRTTDIWRSFISQKILHLSGLTVSFVPTNAVQFRNA 103
Query: 407 HWFIIEWKSLHAPQSNSG-T*NFLENNKCLT 318
H ++ + K +SG FL N KC T
Sbjct: 104 HNYLKDLKDEKQVYEDSGRMIEFLHNWKCST 134
>U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical
protein F02C9.2 protein.
Length = 806
Score = 28.7 bits (61), Expect = 4.0
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = -1
Query: 569 STRDTMPNKSARIFVFLFLPIISTFR*LWTFRSFLKCSFTFCYYITINF------*ILNS 408
++++TM +KSA F LFLP +FR +RSF+ +T++F N+
Sbjct: 277 NSQNTMFHKSA--FHTLFLPTTVSFRTTDIWRSFISQKILHLSGLTVSFVPTNAVHFRNA 334
Query: 407 HWFIIEWKSLHAPQSNSG-T*NFLENNKCLT 318
H ++ ++K +SG FL N C T
Sbjct: 335 HNYLKDFKDEQQVYEDSGRIIEFLHNWNCKT 365
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 261 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 431
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 355 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 413
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 261 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 431
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 261 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 431
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 261 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 431
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 448 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 506
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 261 FSQFGQILD---IVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 431
F+ FG IL + T + FV ++ SAT A+ +M GF K +++Q K+D
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL-KVD 577
>Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical
protein F36D1.3 protein.
Length = 329
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 558 IPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLF 671
IP GIL ++ A+ PNQ+L L L S +SMLF
Sbjct: 87 IPATGILTSICAQIAPNQVLKLPYLIAFISS-YVSMLF 123
>Z68115-7|CAA92169.2| 302|Caenorhabditis elegans Hypothetical
protein F19H6.1 protein.
Length = 302
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 348 SSATVALRSMQGFPFYDKPMRIQYS 422
SS T A S+ G P+Y P RIQ S
Sbjct: 176 SSKTTAAHSLVGTPYYMSPERIQES 200
>Z50873-4|CAA90762.2| 302|Caenorhabditis elegans Hypothetical
protein F19H6.1 protein.
Length = 302
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 348 SSATVALRSMQGFPFYDKPMRIQYS 422
SS T A S+ G P+Y P RIQ S
Sbjct: 176 SSKTTAAHSLVGTPYYMSPERIQES 200
>Z37983-10|CAA86060.4| 267|Caenorhabditis elegans Hypothetical
protein B0393.7 protein.
Length = 267
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = +2
Query: 293 SNENLKNAWSSICYFQGNFKC----HCCFAE 373
+N L W IC +QG +KC +C FA+
Sbjct: 96 ANLCLDRKWQHICAYQGTYKCAKTMNCVFAK 126
>DQ645955-1|ABG36763.1| 302|Caenorhabditis elegans molting protein
MLT-1 protein.
Length = 302
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 348 SSATVALRSMQGFPFYDKPMRIQYS 422
SS T A S+ G P+Y P RIQ S
Sbjct: 176 SSKTTAAHSLVGTPYYMSPERIQES 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,557
Number of Sequences: 27780
Number of extensions: 282413
Number of successful extensions: 666
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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