Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30e10
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1... 26 1.3
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 24 5.3
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 24 7.0
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 7.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 24 7.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 24 7.0
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 24 7.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 24 7.0
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 23 9.2
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 23 9.2
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 23 9.2
>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 59 VFDTALQRFLSMKVT-QFEYFTVNKRTSLFGFFVIVVPMFTFGTLIW 196
V T+ + S+K++ + +YF V S FGFF+ VV F ++W
Sbjct: 172 VLYTSKRIIKSLKLSDRSDYFLV---VSGFGFFIFVVVYLLFKRIVW 215
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.2 bits (50), Expect = 5.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 145 WIFCYCCTHVYIWYLDMERENAA 213
+I YCC +I YLD N A
Sbjct: 31 FILSYCCVSYFINYLDRSSINNA 53
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 82 VSVHESNTV*IFYRKQAN*FVWIFC 156
V+ +E+ + F+R+ N F++IFC
Sbjct: 256 VTTYENASKARFFRRMLNAFIFIFC 280
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 140 LFGFFVIVVPMFTFGTLIWNERTQREQKIRSGELRYKDRLFKLA*SLMNLYT 295
L G I+ + +L+W RT+ +L YK L+ L ++Y+
Sbjct: 820 LLGIKEILFSVLELSSLLWKARTEECTDQYVPQLLYKSNKLNLSVILSDIYS 871
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 82 VSVHESNTV*IFYRKQAN*FVWIFC 156
V+ +E+ + F+R+ N F++IFC
Sbjct: 256 VTTYENASKARFFRRMLNAFIFIFC 280
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 82 VSVHESNTV*IFYRKQAN*FVWIFC 156
V+ +E+ + F+R+ N F++IFC
Sbjct: 228 VTTYENASKARFFRRMLNAFIFIFC 252
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 198 FHIKVPNVNMGTTITKNPNKLVRLFTVKYSNCVTFMDRN 82
F K+P + TT+T N L+ T Y+ V D N
Sbjct: 42 FDFKLPALQYETTVTSLDNFLIGGSTTLYTATVNHEDLN 80
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 82 VSVHESNTV*IFYRKQAN*FVWIFC 156
V+ +E+ + F+R+ N F++IFC
Sbjct: 256 VTTYENASKARFFRRMLNAFIFIFC 280
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 23.4 bits (48), Expect = 9.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 256 SVFVTELSTANLLF---TLRSLVPYQGTKCKHGYNNNKK 149
+VF T + N+LF + +++ GTK G+N+N K
Sbjct: 191 AVFNTWGTVLNMLFLAIVMITVLAVAGTKTPRGFNSNHK 229
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 19 KNKPLEKRFGGWLCFRHSIAKVSVHESNTV 108
+N+P +R GWL ++I V+ + +++
Sbjct: 165 ENQPSARRIHGWLAHNNAIFSVNFSKDDSL 194
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 3 WSS*NKEQTPGKTLRRLVMFST 68
W + NKE G +RRL+ F T
Sbjct: 319 WMNENKEIFKGLDVRRLISFGT 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,745
Number of Sequences: 5004
Number of extensions: 25125
Number of successful extensions: 74
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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