Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e10
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823...    29   0.69 
09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847...    27   2.8  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   2.8  
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142...    27   3.7  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   3.7  
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629...    26   8.5  

>09_06_0206 -
           21580240-21580467,21580544-21580591,21581533-21582321,
           21582779-21582979
          Length = 421

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 8   FLKQRTNPWKNASEAGYVFDTALQRFLSMKV 100
           F+ QR   W N S     +DT L RF+++K+
Sbjct: 44  FVAQRKLGWGNFSTVWLAYDTLLNRFVALKI 74


>09_02_0580 +
           10884012-10884081,10884173-10884419,10884472-10884735,
           10885630-10886093,10888326-10888396
          Length = 371

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 17  QRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSL 142
           Q    WKN S A  + DT+L   + + V Q     V+  TSL
Sbjct: 208 QLDRTWKNLSTASTIKDTSLDYAVPLPVMQTAAEAVSNETSL 249


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 151 KSKQTSSL--VYG--KIFKLCYFHGQKPLQCCVENITSLRSVFP 32
           KS++  SL   YG  +  KLCY H   PLQ CV    S  S+FP
Sbjct: 548 KSEEWKSLQQAYGIMQALKLCYDHLSNPLQQCV----SYCSLFP 587


>04_04_1500 +
           34010819-34011016,34013267-34013308,34014195-34014204,
           34014526-34014586,34014621-34014678,34015266-34015412,
           34015643-34016205,34018942-34019728
          Length = 621

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 226 SQWRAPLQRQTLQASLITDELVHNRKYIVNIMLKK 330
           SQWRA   +Q ++     + L H + ++ ++  +K
Sbjct: 85  SQWRAERIKQQIKVHFCANRLAHRKLFVASLSFEK 119


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 35   KNASEAGYVFDTALQRFLSMKVTQFEYFTVN 127
            ++++E GY    ALQ F+ MK   +E F+ +
Sbjct: 1163 RSSTERGYSKSRALQAFIEMKEVTYEKFSAS 1193


>12_02_0618 -
           21262021-21262117,21262429-21262466,21262933-21262986,
           21263274-21263438,21263523-21263759,21263857-21263918,
           21264543-21264656,21264816-21264942,21266200-21266218,
           21266338-21266428,21266932-21267094,21267182-21267330,
           21268147-21268287,21268368-21268533,21268568-21268631,
           21268729-21269084,21269759-21269977,21270328-21270433,
           21270713-21270942
          Length = 865

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 8   FLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFT 121
           +  + T   + A+E G    + L+ F+   + QFE+FT
Sbjct: 491 YTPKETRLLREAAECGATVVSGLEMFIRQAMGQFEHFT 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,934,412
Number of Sequences: 37544
Number of extensions: 135357
Number of successful extensions: 352
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)