Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30e09
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 1.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 1.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.2
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 27 3.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.2
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 5.6
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 5.6
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 25 7.4
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 25 9.7
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.7
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -2
Query: 422 PIRIIALLTFSL-PTLKCAISISITTRAEAF-FS*AWTWHTTIMELVWYESIGAVTFPFY 249
P+RI ++ T+S P+ C+ + ++F + T+HTT + I ++T P +
Sbjct: 93 PLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASENKKIESITIPDH 152
Query: 248 TFIFDSYAIYSETLHS 201
+++ + HS
Sbjct: 153 ASVYNDLPLSPTVKHS 168
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/76 (26%), Positives = 28/76 (36%)
Frame = +3
Query: 210 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQ 389
C+ + Y +GK YC + F RC C G + F Y NG Q W
Sbjct: 209 CYTVFGPNDSYYEYEGKVYCHYHY-STLFAARCCGCDGPILRQF---VEVYRNGVSQNWH 264
Query: 390 GKCQQCYDSYGNFVCR 437
C Y + +C+
Sbjct: 265 VPCHMIYKFWNVKLCQ 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.2
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Frame = +3
Query: 15 PC-LICICMKYVSAFITLHTFP*C--ESVKYNM*HCSKISFEIVKCKSGSRSLVFLCSRA 185
PC L+C T+ F C ES+ + SK++ E +C++ L+ C
Sbjct: 293 PCPLLCHPGPCPPCTATVEKFCLCGKESIHARCSNISKVNTEPFRCENVCDELL-PCGEH 351
Query: 186 PSLSVTMKCFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYG 365
+ +C + C G +E I KCYC H + PC L +
Sbjct: 352 ---TCKKRCHSGLC-GACFEPINAKCYCG-------LHSKTYPCSSLPSPSIS---KKDE 397
Query: 366 NGTLQCWQG 392
NG+++ W G
Sbjct: 398 NGSVKEWFG 406
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 139 FTISKLIFEQCHILYLTDS 83
FT++KL+ QCH L+L S
Sbjct: 309 FTLAKLVATQCHRLWLVQS 327
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 136 TISKLIFEQCHILYLTDSHHGNVWSVI 56
T+ K+IF HI L+D+ +W I
Sbjct: 2460 TVQKIIFPLAHIQMLSDADANKLWQYI 2486
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 363 GNGTLQCWQGKCQQCYDSYGNFVCRDGIDQILLISTTQI-VMGSA 494
G+GT Q + C D ++VCRD I ++ST + +GSA
Sbjct: 1119 GHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSA 1163
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 328 EKNASALVVIDMEMAHFNVGKENVNN 405
+K+ + +++D+E A N +EN+NN
Sbjct: 325 KKSKGSALMVDIEAADINKTEENINN 350
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 443 HRPNSADFNDANSYGIRINSRNHSYIHTALQIMCGDYHR 559
HR AD D+N + +R S+I++ LQI DY +
Sbjct: 133 HRAFKADVMDSNGQLVLQLNRPFSWINSRLQIHSIDYSK 171
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 1 EITYHRALYVFV 36
EI+YHR LY+F+
Sbjct: 63 EISYHRILYIFI 74
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 370 PFPYLLQQGPKHFSPRPGHGTQRS 299
PFP+ +QQ P H P T S
Sbjct: 333 PFPFSIQQPPLHLEPPLSSNTLNS 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,998
Number of Sequences: 5004
Number of extensions: 68149
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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