Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e07
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   3.7  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    26   4.9  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   8.6  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   8.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.6  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   8.6  

>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 170 LPHSCF*SHIRRSFTLSIVIIYHSYVIDNFLIRF 271
           LPH+ F +HI   F +S + +  SY    +++ F
Sbjct: 2   LPHTAFSNHIHYHFIISFMKMNDSYTPYTYIVSF 35


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +1

Query: 481 DTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKSVIPDTGAKCGR 660
           DT   K    L  +EH  +  E+Y EK  N++   +T I        K V+ +  AK G 
Sbjct: 115 DTFPAKAQKALTFLEHHLRDLEDYAEKSKNNVETLMTDI--------KDVV-EHAAKLGA 165

Query: 661 HYQFTDEECIVTLTHENASVSGKRYF 738
               T EE  V   +    + G R++
Sbjct: 166 QRLITLEELPVQWHNNPYIIRGYRFY 191


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 295 LKTAISYTQLLFA*KKMPSIAGKYQHYKNEDIDDY 399
           ++ A SY   L A +K+  I GKYQ  + ++ D+Y
Sbjct: 10  MEYASSYETWLEAAEKLDVIEGKYQWREQKESDEY 44


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 484  TMTI-KNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKS 627
            T TI K +      + K+K+     + MP+  IK + T   D   +TKS
Sbjct: 1314 TSTIDKTTGAPELAQKKYKVYVGQGKNMPHKTIKIIVTDNQDHSFKTKS 1362


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 364 YQHYKNEDIDDYFSAVGVPFM---GRKMMSMSS 453
           YQH   E I + FS + +PF+   G+K + +S+
Sbjct: 23  YQHRNFESILEIFSVLFIPFLCNSGKKFLQISN 55


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 364  YQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNS 504
            +Q Y + D  +    VGVP  GR++ +M      +S++     I  S
Sbjct: 1188 WQRYFDLDPAELGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRS 1234


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 269 ILSKNYQSRMNDK*LQLIK*RTYEYVIKSMNVV 171
           +L+KNYQ R+ D  +  I   T+ Y +KS++ +
Sbjct: 516 LLTKNYQERLMDSRIDAISKFTHSY-LKSLSEI 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,644
Number of Sequences: 5004
Number of extensions: 57457
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)