Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e06
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...   171   1e-43
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    30   0.28 
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    28   1.1  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    27   2.6  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   4.6  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  

>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score =  171 bits (415), Expect = 1e-43
 Identities = 83/162 (51%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
 Frame = +2

Query: 182 NSMILPRLPPAFSTASGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDMIQLPV-Q 358
           +S ++   PP   T S +   P TA+VM+NMGGP   D+VG +L R+ TD D+I L   Q
Sbjct: 11  SSTVMDESPPNGVTKSVSGKGP-TAVVMMNMGGPSNLDEVGPFLERLFTDGDIIPLGYFQ 69

Query: 359 SKLGPWIASRRTEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAPHKHYVAFR 538
           + LG +IA RRT +V+  YS+IGGGSPIL WT  QGS + + LD+  PESAPH  +VAFR
Sbjct: 70  NSLGKFIAKRRTPKVQNHYSDIGGGSPILHWTRIQGSEMCKILDKKCPESAPHLPFVAFR 129

Query: 539 YVPPFTEDAFREVESDGADRVIIFSQYPQYSCATTGSSLNAI 664
           Y PP TED   E++     R + FSQYPQ+SCAT+G+SLN +
Sbjct: 130 YAPPLTEDMLDELKKANVSRAVAFSQYPQWSCATSGASLNEL 171


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 227 SGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDMIQLPVQSKLGPWIASRRTEEVK 406
           S + + PK  +  LN   P+  + +GD        + +I+   +   G W+A+ R EEV 
Sbjct: 233 SPSTIDPKGYLTSLNSMVPKNANDLGDIRKARKLLQSVIETNPKHASG-WVAAARLEEVA 291

Query: 407 KKYSE 421
            K S+
Sbjct: 292 NKLSQ 296


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -2

Query: 672 KSAIAFRLEPVVAQLY*GYCENMITLSAPSLSTSLKASSVNGGTYLN 532
           KS I F + P  A L  GY    I LS P LS +      NG   L+
Sbjct: 298 KSPIPFSVPPSRATLTGGYASGSIGLSTPGLSRAPHYELDNGNRLLS 344


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 364 FTLHRKLDHVSVCHYPVKIVTNLVRGLRPTHIQHDYSSL 248
           FT    +D+V  C    +   +L +GL PT   H Y +L
Sbjct: 354 FTAESVVDYVRRCFVAFEKGLSLSKGLLPTDFTHGYEAL 392


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 391 PSTGYPRSQFTLHRKLDHVSVCHYPVKIVTNL 296
           P   YP   +  HR L+   +  YPV+I   L
Sbjct: 284 PRPSYPYQDYIAHRPLEVAVLLGYPVEIAKEL 315


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 197 PRLPPAFSTASGTAVKPKTAIVMLNMGG---PETTDQVGDY 310
           PR+PP+FS  + ++    TA  + N+GG   P   +Q  +Y
Sbjct: 430 PRVPPSFSDDAVSSFSLVTAPSINNVGGSTAPSVNNQEREY 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,255
Number of Sequences: 5004
Number of extensions: 56722
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)