Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e06
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical pr...    40   0.002
AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical ...    40   0.002
Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical pr...    32   0.35 

>Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 34/178 (19%), Positives = 71/178 (39%)
 Frame = +2

Query: 161 MSKIHRFNSMILPRLPPAFSTASGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDM 340
           M+K+   N  ++ R+      ++  A  P+T I++L+ G P       ++L         
Sbjct: 1   MNKMLSRNQNVI-RVAARSHFSADPARSPQTEIILLHAGQPWNEFHAKEFLKNQSAQSMR 59

Query: 341 IQLPVQSKLGPWIASRRTEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAPHK 520
           +++P            + E +K   +       +    +  G  + ++LD ++PE  P K
Sbjct: 60  LRMPNFVHTLIANGKLKNENLKGCIAAYKNVPSLESQVDRLGKKIEESLDTVVPEHGPFK 119

Query: 521 HYVAFRYVPPFTEDAFREVESDGADRVIIFSQYPQYSCATTGSSLNAIADFYRNRTTP 694
               F++     ED  +E++S  +   I    YP +S   + + L   A      ++P
Sbjct: 120 VSRLFQFDEVSFEDQLKEIKSHRSQHYIFMPLYPHFSAIDSETLLVKSAKIIEQTSSP 177


>AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 34/178 (19%), Positives = 71/178 (39%)
 Frame = +2

Query: 161 MSKIHRFNSMILPRLPPAFSTASGTAVKPKTAIVMLNMGGPETTDQVGDYLHRIMTDRDM 340
           M+K+   N  ++ R+      ++  A  P+T I++L+ G P       ++L         
Sbjct: 1   MNKMLSRNQNVI-RVAARSHFSADPARSPQTEIILLHAGQPWNEFHAKEFLKNQSAQSMR 59

Query: 341 IQLPVQSKLGPWIASRRTEEVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAPHK 520
           +++P            + E +K   +       +    +  G  + ++LD ++PE  P K
Sbjct: 60  LRMPNFVHTLIANGKLKNENLKGCIAAYKNVPSLESQVDRLGKKIEESLDTVVPEHGPFK 119

Query: 521 HYVAFRYVPPFTEDAFREVESDGADRVIIFSQYPQYSCATTGSSLNAIADFYRNRTTP 694
               F++     ED  +E++S  +   I    YP +S   + + L   A      ++P
Sbjct: 120 VSRLFQFDEVSFEDQLKEIKSHRSQHYIFMPLYPHFSAIDSETLLVKSAKIIEQTSSP 177


>Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical
           protein K09E9.1 protein.
          Length = 508

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = -2

Query: 399 SSVLLLAIHGPSLLCTGSWIMSLSVIIL*R*SPTWSVVSGPPIFSMTIAVLGLTAVPEAV 220
           +++++L I    + C    I+ LS++I     PTW +     ++S  +    + ++   V
Sbjct: 393 AALMILPIQYYDIQCMRWVIIMLSLMIAAGIDPTWKINH---LYSAELFPTSVRSMARGV 449

Query: 219 LNAGGKRGSIM 187
            NAGG+ GS+M
Sbjct: 450 CNAGGRLGSVM 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,561,893
Number of Sequences: 27780
Number of extensions: 320716
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)