Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e06
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.92 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   3.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 455 NSQGSLLTQALDQMLPESAP 514
           N+ G  L +ALD +LP S P
Sbjct: 222 NADGKTLIEALDAILPPSRP 241


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 488 DQMLPESAPHKHYVAF 535
           D  LPE   ++HY AF
Sbjct: 463 DNFLPEKTANRHYYAF 478


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 398 EVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAP 514
           EV  K     G +   K    +G  L +ALD +LP + P
Sbjct: 130 EVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 168


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 398 EVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAP 514
           EV  K     G +   K    +G  L +ALD +LP + P
Sbjct: 146 EVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 184


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 398 EVKKKYSEIGGGSPILKWTNSQGSLLTQALDQMLPESAP 514
           EV  K     G +   K    +G  L +ALD +LP + P
Sbjct: 203 EVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 241


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 574 LPEGVFRERRNVSERHV 524
           LPEG+F   R++ E H+
Sbjct: 276 LPEGLFASTRDLREIHL 292


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 451  PFQYR*SSTNLRILLLDFLGPSTGYPRSQFTLHRKLDH 338
            P  Y  SST+  ILL    G + G   + +TLH +  H
Sbjct: 1408 PVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAH 1445


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 451  PFQYR*SSTNLRILLLDFLGPSTGYPRSQFTLHRKLDH 338
            P  Y  SST+  ILL    G + G   + +TLH +  H
Sbjct: 1404 PVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHYRTAH 1441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,890
Number of Sequences: 438
Number of extensions: 3956
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)