Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30e04
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 31 0.078
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.14
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.32
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.55
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.55
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 28 0.96
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 2.9
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 26 3.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 25 9.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.0
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 9.0
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 9.0
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 9.0
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 31.5 bits (68), Expect = 0.078
Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Frame = -2
Query: 357 CPPLRALDLSFARCLDDAKLRGILAPPEN------SRPGGGARAGEPSRLAALAVLRLPG 196
CP L +L+LS LDD +R +LA N PGG G + L VL G
Sbjct: 345 CPNLISLNLSRIFYLDDECVR-LLAGCRNLVSLKIESPGGIINDG-----SILDVLNQIG 398
Query: 195 TKLVELDASSCARLTDAGAAQ---LAHHSLQRLSLAGCRLLTE 76
+ L L S C +LTD Q L+ L+L+G LLT+
Sbjct: 399 SGLHTLSLSGCTKLTDEVLKQGIGPCCGRLKHLNLSGLELLTD 441
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 128 ANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLA 307
++ A+P S S +H +SSS+SLV S+ ++ L + P + + L+
Sbjct: 109 SSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLS 168
Query: 308 SS 313
SS
Sbjct: 169 SS 170
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 29.5 bits (63), Expect = 0.32
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 NCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLAS 310
N +PA S A SSS + R + + P PPP E+S S+P S +
Sbjct: 175 NNYSPAVKSPAAQRRSSSYMVPANSRGSPANYNTPYYPTAIPPPIEEYSPSVSLPTSPVA 234
Query: 311 SRQRAN-ERSSARR 349
N +RSS R
Sbjct: 235 EESYNNVQRSSTVR 248
Score = 26.2 bits (55), Expect = 2.9
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 370 ALGELPPSAGAGPLVC-SLPRRR*AARDTGAPGELAAGGRSPSRGAQSPGRT 218
A GE P S A P+ + R RD+GA E R PS A S GR+
Sbjct: 531 ASGEAPYSYPAPPVPSVNNAGARLTLRDSGAAPEATYSLRQPSNHAYSEGRS 582
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.55
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +2
Query: 95 PASESRCSE*CANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREF 274
P+S S S ++ ++ +S S + +SSS+S S++S++ S + + P
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214
Query: 275 SGGASIPRSLASSRQRANERSSA 343
S S S +SS ++ SS+
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSS 237
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/83 (21%), Positives = 41/83 (49%)
Frame = +2
Query: 95 PASESRCSE*CANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREF 274
P+S S + + ++ +S S + +SSS+S S++S++ S + +
Sbjct: 144 PSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSS 202
Query: 275 SGGASIPRSLASSRQRANERSSA 343
S +S+P + ++S ++ SS+
Sbjct: 203 SSSSSVPITSSTSSSHSSSSSSS 225
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/82 (21%), Positives = 36/82 (43%)
Frame = +2
Query: 98 ASESRCSE*CANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFS 277
+S S S +P+S S + +SSS+S S++S++ S + + S
Sbjct: 140 SSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 199
Query: 278 GGASIPRSLASSRQRANERSSA 343
+S S+ + ++ SS+
Sbjct: 200 SSSSSSSSVPITSSTSSSHSSS 221
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 28.7 bits (61), Expect = 0.55
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +2
Query: 149 SVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQRAN 328
+ S + +SSS+SLV S++S+A +P+ S +S +SS +++
Sbjct: 114 AASSSSSSSSSSSSLVSSTTSSSSSA----TPSTTSSSSSSSSSSSSSSSKSSSSSSKSS 169
Query: 329 ERSSAR 346
RSS+R
Sbjct: 170 SRSSSR 175
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 27.9 bits (59), Expect = 0.96
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 281 PRRTRGRGAEPEPGSPVAWPHSLYCVCPEPNWWNWM 174
PR+ RG S LYC+C +P+ +WM
Sbjct: 97 PRKHRGNANSQLNLSTADHQRPLYCICQKPDDGSWM 132
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 149 SVSRAHDDASSSTSLVPGRRSTASAARRLGSPAR 250
S+ R H+D SSTS R+T + R+G P++
Sbjct: 358 SLKRKHEDDESSTS-TKSSRTTKTPFTRVGDPSQ 390
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 266 GRGAEPEPGSPVAWPHSLYCVCPEPNWWNWMRRRAPDSRTQV 141
G G G A H + C+ +W +R PDS TQ+
Sbjct: 453 GNGPHVCLGQRYAVNHLIACIGKASIMLDWKHKRTPDSDTQM 494
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = +2
Query: 143 PASVSRAHDDASSSTSLVPGRRSTA----SAARRLGSPARAPPPGREFSGGASIPRSLAS 310
P S SRA + + +PGR + A A R +P PP S S+P S
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Query: 311 S 313
S
Sbjct: 438 S 438
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 140 APASVSRAHDDASSSTSLVPGRRSTASA-ARRLGSPARAPPPGREFSGGASIPRSLASS 313
AP S++ A + S P R +A+A A P PPP R G I ++S
Sbjct: 276 APVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNS 334
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 120 SLQRLSLAGCRLLTEAALDHLARCPNL 40
+L+ LSLA L A LD LA CP L
Sbjct: 88 NLKTLSLAQNHLQEIADLDPLASCPQL 114
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 128 ANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPP 262
A+ A PA++SR +SS S +P TAS + A PPP
Sbjct: 890 ASSAQPAAMSR-----TSSVSTLPPPPPTASMTASAPAIASPPPP 929
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 146 ASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSR 316
ASVSRA+ A+++ + A+A + S A +P P +G A + + SR
Sbjct: 148 ASVSRANSTATTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVSTTATPSR 204
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 PASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPP 262
P + S+ + S+++SL PG +T A S P P
Sbjct: 224 PEATSKENPFKSTTSSLRPGSSTTTEAGANNASKPHMPQP 263
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 149 SVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPG--REFSGGASIPRSLASSRQR 322
SVS + + +S+ST G + + + S R P R +SG + + ASS+
Sbjct: 49 SVSGSPNSSSNSTPANQGSLPSHTNPQLYSSITRKERPELFRSYSGNPRLSKPYASSKLA 108
Query: 323 ANERSSA 343
A+ R+++
Sbjct: 109 ASSRTAS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,083
Number of Sequences: 5004
Number of extensions: 32173
Number of successful extensions: 136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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