Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30e04
(520 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical pr... 34 0.053
L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical pr... 34 0.053
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 32 0.28
U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical pr... 31 0.37
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 31 0.37
U41533-10|AAA83172.1| 491|Caenorhabditis elegans Hypothetical p... 31 0.49
U41533-8|AAA83171.2| 588|Caenorhabditis elegans Hypothetical pr... 31 0.49
U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical pr... 31 0.65
AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical... 31 0.65
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 30 0.86
AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 30 0.86
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 30 1.1
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 30 1.1
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 29 2.0
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 29 2.0
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 29 2.0
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.6
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 29 2.6
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 29 2.6
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 3.5
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 3.5
V01494-1|CAA24738.1| 91|Caenorhabditis elegans myosin heavy ch... 28 3.5
U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like pr... 28 3.5
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 3.5
AF016430-9|ABR92614.1| 199|Caenorhabditis elegans Hypothetical ... 28 3.5
AF016430-8|AAK95868.2| 200|Caenorhabditis elegans Hypothetical ... 28 3.5
AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like ... 28 3.5
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 28 4.6
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 28 4.6
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 28 4.6
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr... 27 6.1
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 27 6.1
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 27 6.1
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 27 8.0
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 8.0
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 8.0
U10402-12|AAA19071.1| 122|Caenorhabditis elegans Hypothetical p... 27 8.0
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 8.0
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 8.0
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 8.0
>L14745-2|AAA27922.2| 461|Caenorhabditis elegans Hypothetical
protein C02F5.7a protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.053
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -2
Query: 195 TKLVELDASSCARLTDAGAAQLA---HHSLQRLSLAGCRLLTEAALDHLARCPNL 40
T L EL S C +TD LA +L L L C LT++ L HL C L
Sbjct: 357 TALRELSLSHCELITDESIQNLASKHRETLNVLELDNCPQLTDSTLSHLRHCKAL 411
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = -2
Query: 192 KLVELDASSCARLTDAGAAQLAHH--SLQRLSLAGCRLLTEAALDHLA 55
+L LD C+ ++D LA++ +L+ LSL+ C L+T+ ++ +LA
Sbjct: 332 QLERLDMEDCSLISDHTINSLANNCTALRELSLSHCELITDESIQNLA 379
Score = 31.5 bits (68), Expect = 0.37
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Frame = -2
Query: 333 LSFARCLDDAKLRGILAPPENSRPGGGARAGEPSRLAALAVLRLP----------GTKLV 184
LS + LD LRG EN A G +L L +L T L
Sbjct: 223 LSNCKSLDTLILRGCEGLTENVFGSVEAHMGAIKKLNLLQCFQLTDITVQNIANGATALE 282
Query: 183 ELDASSCARLTDAGAAQLAHHS--LQRLSLAGCRLLTEAALDHLAR 52
L S+C +++D L HS L+ L L+GC LL + LAR
Sbjct: 283 YLCMSNCNQISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLAR 328
>L14745-1|AAM15540.1| 466|Caenorhabditis elegans Hypothetical
protein C02F5.7b protein.
Length = 466
Score = 34.3 bits (75), Expect = 0.053
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -2
Query: 195 TKLVELDASSCARLTDAGAAQLA---HHSLQRLSLAGCRLLTEAALDHLARCPNL 40
T L EL S C +TD LA +L L L C LT++ L HL C L
Sbjct: 357 TALRELSLSHCELITDESIQNLASKHRETLNVLELDNCPQLTDSTLSHLRHCKAL 411
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = -2
Query: 192 KLVELDASSCARLTDAGAAQLAHH--SLQRLSLAGCRLLTEAALDHLA 55
+L LD C+ ++D LA++ +L+ LSL+ C L+T+ ++ +LA
Sbjct: 332 QLERLDMEDCSLISDHTINSLANNCTALRELSLSHCELITDESIQNLA 379
Score = 31.5 bits (68), Expect = 0.37
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Frame = -2
Query: 333 LSFARCLDDAKLRGILAPPENSRPGGGARAGEPSRLAALAVLRLP----------GTKLV 184
LS + LD LRG EN A G +L L +L T L
Sbjct: 223 LSNCKSLDTLILRGCEGLTENVFGSVEAHMGAIKKLNLLQCFQLTDITVQNIANGATALE 282
Query: 183 ELDASSCARLTDAGAAQLAHHS--LQRLSLAGCRLLTEAALDHLAR 52
L S+C +++D L HS L+ L L+GC LL + LAR
Sbjct: 283 YLCMSNCNQISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLAR 328
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 31.9 bits (69), Expect = 0.28
Identities = 26/74 (35%), Positives = 37/74 (50%)
Frame = +2
Query: 137 AAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSR 316
A+ SVSR SSS V GR + +++R S +R+ R S S S SSR
Sbjct: 98 ASRGSVSRR----SSSRGSVYGRTGRSRSSKRSRSRSRSRSRSRSRSYSRSRSGSRRSSR 153
Query: 317 QRANERSSARRGGQ 358
+R+ RSS + G+
Sbjct: 154 RRSRRRSSLKARGR 167
>U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical
protein F10D7.5c protein.
Length = 437
Score = 31.5 bits (68), Expect = 0.37
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 143 PASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQR 322
P RA +SSSTS +P R S A+ + P+ PPP AS R+ + Q
Sbjct: 325 PPVAPRAVLGSSSSTSRLPNRSSPATTTAMMSPPSFNPPP-----LPASFQRNEGNGAQE 379
Query: 323 ANE 331
NE
Sbjct: 380 VNE 382
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 31.5 bits (68), Expect = 0.37
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 143 PASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQR 322
P RA +SSSTS +P R S A+ + P+ PPP AS R+ + Q
Sbjct: 505 PPVAPRAVLGSSSSTSRLPNRSSPATTTAMMSPPSFNPPP-----LPASFQRNEGNGAQE 559
Query: 323 ANE 331
NE
Sbjct: 560 VNE 562
>U41533-10|AAA83172.1| 491|Caenorhabditis elegans Hypothetical
protein R05F9.1a protein.
Length = 491
Score = 31.1 bits (67), Expect = 0.49
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +2
Query: 137 AAPASVSRAHDDASSST----SLVPGRRSTASAARRLGSPARAPP--PGREFSGGASIPR 298
+A +S S+A AS+ST SLV GR S +S+ SP+ +P G SG ++ R
Sbjct: 20 SATSSSSQAGPSASTSTARKSSLVGGRGSASSSGHTSPSPSESPARNAGCSSSGESNPDR 79
Query: 299 SLASSRQRANERSSARRG 352
SL + + SA+ G
Sbjct: 80 SLTTPPLAPALKHSAKDG 97
>U41533-8|AAA83171.2| 588|Caenorhabditis elegans Hypothetical
protein R05F9.1b protein.
Length = 588
Score = 31.1 bits (67), Expect = 0.49
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +2
Query: 137 AAPASVSRAHDDASSST----SLVPGRRSTASAARRLGSPARAPP--PGREFSGGASIPR 298
+A +S S+A AS+ST SLV GR S +S+ SP+ +P G SG ++ R
Sbjct: 117 SATSSSSQAGPSASTSTARKSSLVGGRGSASSSGHTSPSPSESPARNAGCSSSGESNPDR 176
Query: 299 SLASSRQRANERSSARRG 352
SL + + SA+ G
Sbjct: 177 SLTTPPLAPALKHSAKDG 194
>U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical
protein C10G11.9 protein.
Length = 203
Score = 30.7 bits (66), Expect = 0.65
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 149 SVSRAHDDA-SSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQRA 325
SVSR SSS V GR + +++R S +R S S S SSR+R+
Sbjct: 103 SVSRGSKSRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRRRS 162
Query: 326 NERSSARRGGQ 358
RSS++ G+
Sbjct: 163 RRRSSSKARGR 173
>AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical
protein Y54F10BM.1 protein.
Length = 766
Score = 30.7 bits (66), Expect = 0.65
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 170 DASSSTSLVPGRRSTASAARRLGSPARAPPP 262
D SSS+S P RR T SA++ L +P PP
Sbjct: 567 DESSSSSTPPDRRITRSASKGLKTPPTPEPP 597
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 30.3 bits (65), Expect = 0.86
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 149 SVSRAHDDA-SSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQRA 325
SVSR SSS V GR + +++R S +R S S S SSR+R+
Sbjct: 103 SVSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRRRS 162
Query: 326 NERSSARRGGQ 358
RSS++ G+
Sbjct: 163 RHRSSSKARGR 173
>AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical
protein Y108G3AL.3 protein.
Length = 685
Score = 30.3 bits (65), Expect = 0.86
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +2
Query: 155 SRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQRANER 334
S H++ SS P R + A +PA PP R+ +GG+ PR+ +++ +ER
Sbjct: 469 SSPHEEKKSSH---PSSRKGSKATDE-NAPATRPP-SRKAAGGSHEPRAKTPNQKNKDER 523
Query: 335 SSARR 349
+ RR
Sbjct: 524 PTTRR 528
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -1
Query: 277 GELAAGGRSPSRGAQS----PGRTRCTASARNQTGGTGCVVVRPTH 152
GELA GGR G S R T ++ T GT C + +P H
Sbjct: 283 GELAVGGRCKCNGHASRCIFDKMGRYTCDCKHNTAGTECEMCKPFH 328
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -1
Query: 277 GELAAGGRSPSRGAQS----PGRTRCTASARNQTGGTGCVVVRPTH 152
GELA GGR G S R T ++ T GT C + +P H
Sbjct: 283 GELAVGGRCKCNGHASRCIFDKMGRYTCDCKHNTAGTECEMCKPFH 328
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +2
Query: 140 APASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPP 262
A S S HD TS +PGR S GS PPP
Sbjct: 421 ANISTSSIHDAPPPPTSPIPGRSRPVSYIETNGSGVAIPPP 461
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +2
Query: 98 ASESRCSE*CANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGRE 271
A S CS N P+S +H +SS S PG R +A +A A A P R+
Sbjct: 731 AEASLCSSSSVN---PSSYPSSHRPSSSILSSSPGSRISAPSAASSAKSAPAASPSRQ 785
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 149 SVSRAHDDASSSTSLVPGRRSTASAARRLGSPARA--PPPGREFSGGASIPRSLASSRQR 322
S SR+ + S T P R S RR S +R+ PPP + S RS ++SR
Sbjct: 129 SRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSP 188
Query: 323 ANERSSAR 346
+ RS++R
Sbjct: 189 SRSRSNSR 196
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +2
Query: 98 ASESRCSE*CANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGRE 271
A S CS N P+S +H +SS S PG R +A +A A A P R+
Sbjct: 731 AEASLCSSSSVN---PSSYPSSHRPSSSILSSSPGSRISAPSAASSAKSAPAASPSRQ 785
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 268 AAGGRSPSRGAQSPGRTRCTASARNQTGGTGCVVVRPTHGRRCGA 134
A GR+ S+ ++P +T +ASAR+++ G RPT+ R A
Sbjct: 65 ATRGRTASKTPKTPSKTPSSASARSRSRSRG----RPTNASRLSA 105
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 371 CARRAAPLCGRWTSRLLAASTTLSCAGYWRPRRTRGRGAEPEPGSPVAW 225
C + + P C AA+ AGY PR G GA P P P A+
Sbjct: 28 CCQPSQPACANPCGGASAAAYAAPAAGY--PRPPIGYGAPPPPPPPPAF 74
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 371 CARRAAPLCGRWTSRLLAASTTLSCAGYWRPRRTRGRGAEPEPGSPVAW 225
C + + P C AA+ AGY PR G GA P P P A+
Sbjct: 28 CCQPSQPACANPCGGASAAAYAAPAAGY--PRPPIGYGAPPPPPPPPAF 74
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 371 CARRAAPLCGRWTSRLLAASTTLSCAGYWRPRRTRGRGAEPEPGSPVAW 225
C + + P C AA+ AGY PR G GA P P P A+
Sbjct: 28 CCQPSQPACANPCGGASAAAYAAPAAGY--PRPPIGYGAPPPPPPPPAF 74
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 140 APASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARA 253
A S+S+ + +S S+ PG +S+ASAA + SP+RA
Sbjct: 1922 AENSLSKMRSKSRASASVAPGLQSSASAA-VIRSPSRA 1958
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 140 APASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARA 253
A S+S+ + +S S+ PG +S+ASAA + SP+RA
Sbjct: 1922 AENSLSKMRSKSRASASVAPGLQSSASAA-VIRSPSRA 1958
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = -3
Query: 284 RPRRTRGRGAEPEPGSP----VAWPHSLYCVCP 198
RP + RG++ PG+P + P + YC CP
Sbjct: 254 RPGQPGNRGSDGHPGTPGGRGLPGPDAAYCACP 286
>V01494-1|CAA24738.1| 91|Caenorhabditis elegans myosin heavy chain
protein.
Length = 91
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 140 APASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARA 253
A S+S+ + +S S+ PG +S+ASAA + SP+RA
Sbjct: 50 AENSLSKMRSKSRASASVAPGLQSSASAA-VIRSPSRA 86
>U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like
protein protein 15 protein.
Length = 587
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 137 AAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSR 316
AA S A+ S PG + +AARR P+R P P +G AS+P A ++
Sbjct: 26 AAAPSTKEANSTTIPRQS-APGGITIGAAARR--PPSRLPTPTTPATGRASLPERSAMAK 82
Query: 317 QRANER 334
+ R
Sbjct: 83 PASCSR 88
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 140 APASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARA 253
A S+S+ + +S S+ PG +S+ASAA + SP+RA
Sbjct: 1925 AENSLSKMRSKSRASASVAPGLQSSASAA-VIRSPSRA 1961
>AF016430-9|ABR92614.1| 199|Caenorhabditis elegans Hypothetical
protein C05C8.1b protein.
Length = 199
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -2
Query: 165 CARLTDAGAAQLAHH---SLQRLSLAGCRLLTEAALDHLAR 52
C L D G + +H L+ L + CR +TE L+HL +
Sbjct: 121 CKNLHDFGLEYMGNHVGGHLKTLHIEECRRITEFGLEHLTK 161
>AF016430-8|AAK95868.2| 200|Caenorhabditis elegans Hypothetical
protein C05C8.1a protein.
Length = 200
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -2
Query: 165 CARLTDAGAAQLAHH---SLQRLSLAGCRLLTEAALDHLAR 52
C L D G + +H L+ L + CR +TE L+HL +
Sbjct: 122 CKNLHDFGLEYMGNHVGGHLKTLHIEECRRITEFGLEHLTK 162
>AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like
protein-15 protein.
Length = 587
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 137 AAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSR 316
AA S A+ S PG + +AARR P+R P P +G AS+P A ++
Sbjct: 26 AAAPSTKEANSTTIPRQS-APGGITIGAAARR--PPSRLPTPTTPATGRASLPERSAMAK 82
Query: 317 QRANER 334
+ R
Sbjct: 83 PASCSR 88
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 231 RLAALAVLRLPGTKLVELDASSCARLTDAGAAQLAHHSLQRLS 103
+L AL VL L L E+D + +D + +L+H++ +R S
Sbjct: 510 QLPALDVLHLDHNNLNEIDRDAFRSFSDLQSLKLSHNAFRRFS 552
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -1
Query: 292 DTGAPGELAAGGRSPSRGAQSPGRTRCTASARNQTGGTG 176
D G PG GGR RG T +TGG G
Sbjct: 155 DAGPPGPPGNGGRPGQRGTPGEAGTPGPVGEPGETGGPG 193
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +2
Query: 128 ANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLA 307
A+ AA S S S++++ G ST +A S A P G +GG++ +
Sbjct: 55 ASTAAGGSTSTTAAGGSTASTAAGGSTSTTAAGGSTASTAAGGPTGSTAAGGSTASTAAG 114
Query: 308 SS 313
S
Sbjct: 115 GS 116
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 206 RSTASAARRLGSPARAPPPGREFSGGASIPRSL-ASSRQRANERSSARRGGQ 358
RS +R SP+R+P P R ++ RS +SSR ++ R S+ G+
Sbjct: 522 RSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERGR 573
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 140 APASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAPPP-GREFSGGASIPRSLASSR 316
A S SR++ + S + RRS + ++ R S +R+PP R S S RS + S
Sbjct: 203 AGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSA 262
Query: 317 QRANERSSAR 346
RS +R
Sbjct: 263 DNRKSRSPSR 272
>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
protein C28A5.2 protein.
Length = 1218
Score = 27.5 bits (58), Expect = 6.1
Identities = 21/65 (32%), Positives = 24/65 (36%)
Frame = +2
Query: 164 HDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQRANERSSA 343
HD ASS S V S +G P +PPP R G S P R SS
Sbjct: 679 HDQASSRASTVDRLASDVDKIS-IGRPDYSPPPRRRIF-GYSTPGDRVRPRNSYGSSSSG 736
Query: 344 RRGGQ 358
G+
Sbjct: 737 SLNGR 741
>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
protein C28A5.1 protein.
Length = 1223
Score = 27.5 bits (58), Expect = 6.1
Identities = 21/65 (32%), Positives = 24/65 (36%)
Frame = +2
Query: 164 HDDASSSTSLVPGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQRANERSSA 343
HD ASS S V S +G P +PPP R G S P R SS
Sbjct: 679 HDQASSRASTVDRLASDVDKIS-IGRPDYSPPPRRRIF-GYSTPGDRVRPRNSYGSSSSG 736
Query: 344 RRGGQ 358
G+
Sbjct: 737 SLNGR 741
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 206 RSTASAARRLGSPARAPPPGREFSGGASIPRSL-ASSRQRANERSSARRGGQ 358
RS +R SP+R+P P R ++ RS +SSR ++ R S+ G+
Sbjct: 522 RSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSRSSSSSRKSSPERGR 573
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 128 ANCAAPASVSRAHDDASSSTSLVPGRRSTASAARRLGSPARAP--PPGREFSGGASIP 295
A A A + + A+++ S+ P S + P P PPG FS GAS P
Sbjct: 371 AQQAREAQMRQMQQAAAAAGSMPPSYPSPGQYPGPMHYPGMPPMMPPGAPFSAGASYP 428
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 170 DASSSTSLVPGRRSTASAARRLGSPARAPPPGR-EFSGGASIPRSLASSRQR 322
D S +TS P R + S G+ + P PG E S S P++ AS Q+
Sbjct: 184 DDSMNTSPPPNRSTLPSVETSSGNSPQTPYPGSPEASPQPSPPKNTASELQK 235
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 145 CVRESGARRRIQFHQFGSGQTQYSECGQATGLPGSGSAPRPR 270
C E +R + Q +GQ Q E ++ LP GSA + +
Sbjct: 2207 CGSEEDMQRWLTELQVATGQAQLEEASRSQTLPAEGSATKKK 2248
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 145 CVRESGARRRIQFHQFGSGQTQYSECGQATGLPGSGSAPRPR 270
C E +R + Q +GQ Q E ++ LP GSA + +
Sbjct: 2252 CGSEEDMQRWLTELQVATGQAQLEEASRSQTLPAEGSATKKK 2293
>U10402-12|AAA19071.1| 122|Caenorhabditis elegans Hypothetical
protein C34E10.9 protein.
Length = 122
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +2
Query: 197 PGRRSTASAARRLGSPARAPPPGREFSGGASIPRSLASSRQRANERSSAR 346
P + + RLG P P P R GG R+R ER + R
Sbjct: 6 PTTQKVVKTSIRLG-PVNPPTPTRNTQGGHGFSAEFLEYRRRRQERHTVR 54
>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
protein R02F2.2 protein.
Length = 1182
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 287 SIPRSLASSRQRANERSSARRGGQL 361
SIP+ +++SR R N+R + GG++
Sbjct: 109 SIPKFVSASRNRINQRHDSDSGGEM 133
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 145 CVRESGARRRIQFHQFGSGQTQYSECGQATGLPGSGSAPRPR 270
C E +R + Q +GQ Q E ++ LP GSA + +
Sbjct: 2207 CGSEEDMQRWLTELQVATGQAQLEEASRSQTLPAEGSATKKK 2248
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 145 CVRESGARRRIQFHQFGSGQTQYSECGQATGLPGSGSAPRPR 270
C E +R + Q +GQ Q E ++ LP GSA + +
Sbjct: 2207 CGSEEDMQRWLTELQVATGQAQLEEASRSQTLPAEGSATKKK 2248
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 145 CVRESGARRRIQFHQFGSGQTQYSECGQATGLPGSGSAPRPR 270
C E +R + Q +GQ Q E ++ LP GSA + +
Sbjct: 2252 CGSEEDMQRWLTELQVATGQAQLEEASRSQTLPAEGSATKKK 2293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,882
Number of Sequences: 27780
Number of extensions: 236870
Number of successful extensions: 1205
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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