Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e04
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.27 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   3.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   5.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 213 VLRLPGTKLVELDASSCARLTDAGAAQLAHHSLQRLSLAGCRLLTE 76
           +LR+   K+VEL+A  C R  DA   +L  H  + L  A  +L  E
Sbjct: 10  LLRVKDEKIVELEALLCRR--DAEIQELRSHLDKFLQCASLKLAFE 53


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 224 ARRLGSPARAPPPGREFSGGASIPR 298
           A+++ SP   PP   E S G+SIP+
Sbjct: 347 AKQMASPE--PPKSSESSTGSSIPK 369



 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 364 GELPPSAGA 338
           G+LPPSAGA
Sbjct: 407 GQLPPSAGA 415


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 223 GQATGLPGSGSAPRPRVLRGRQYP 294
           G A  +    S+PRP+ L  ++YP
Sbjct: 19  GPAGQVLAGSSSPRPKPLLKKEYP 42


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 179 SSTSLVPGRRSTASAARRLGSPA 247
           +++S+VPG  STA+++  L + A
Sbjct: 114 ATSSMVPGFGSTAASSAALAAAA 136


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 47  PIWSWLDFDNC 15
           P WSW ++ +C
Sbjct: 112 PDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 47  PIWSWLDFDNC 15
           P WSW ++ +C
Sbjct: 112 PDWSWANYKDC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,908
Number of Sequences: 438
Number of extensions: 2648
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)