Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e02
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...   101   8e-23
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    28   1.2  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    27   3.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   6.6  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   8.7  

>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score =  101 bits (243), Expect = 8e-23
 Identities = 46/115 (40%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
 Frame = +1

Query: 364 DIAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWC 543
           ++ Q +VW+D EMTGL++    +ME+A ++TD  L  V    D VI L E  L++MN+WC
Sbjct: 3   NLKQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEMNDWC 62

Query: 544 KVQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEK-ICPLAGNSIYMDRMFL 705
             QHG++GLTE C +S+ ++ + E  +L ++  ++P+K    +AGNS++ D  FL
Sbjct: 63  IEQHGKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFL 117


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 156 MYVM*CCTTI-NFIFFCVMTCSYVQHVKSIS 245
           MYV+    TI  ++FFC  +CS+ Q + +I+
Sbjct: 209 MYVVGLVLTILTYVFFCASSCSFNQAINTIN 239


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +1

Query: 418 ENDHIMEIACLVTDAQLNVVATG--PDIVINLPEVTLNKMNNW 540
           ENDH+ EI CL        + TG     ++    VTL   + W
Sbjct: 204 ENDHVKEITCLAISNDGRWIVTGGLDHRIVIRDSVTLEPQHCW 246


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 617 LSASANDVSDLRQASVNPVSPCWTLHQLFILFK 519
           L AS   + DL+Q +++  +P WT   LF+ FK
Sbjct: 36  LKASVK-LKDLKQ-NISRDAPSWTFEHLFVAFK 66


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 262 YNMIKSTLSRSAITFLTRNLSMSPKIMMK 348
           YN++ +TL R  I  L  N+S+ P I +K
Sbjct: 378 YNILVATLLREGIENLKDNMSIRPGIPVK 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,246
Number of Sequences: 5004
Number of extensions: 61644
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)