Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30e02
(747 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC107887-1|AAI07888.1| 237|Homo sapiens REXO2 protein protein. 139 8e-33
BC105026-1|AAI05027.1| 237|Homo sapiens REX2, RNA exonuclease 2... 139 8e-33
BC105024-1|AAI05025.1| 237|Homo sapiens small fragment nuclease... 139 8e-33
AK223200-1|BAD96920.1| 237|Homo sapiens small fragment nuclease... 139 8e-33
AF151872-1|AAD34109.1| 205|Homo sapiens CGI-114 protein protein. 139 8e-33
CR533500-1|CAG38531.1| 237|Homo sapiens DKFZP566E144 protein. 139 1e-32
BC003502-1|AAH03502.1| 79|Homo sapiens REXO2 protein protein. 66 1e-10
BC021711-1|AAH21711.1| 367|Homo sapiens apolipoprotein B mRNA e... 35 0.36
AL137800-10|CAI19483.1| 367|Homo sapiens apolipoprotein B mRNA ... 35 0.36
AK098557-1|BAC05332.1| 367|Homo sapiens protein ( Homo sapiens ... 35 0.36
AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens ... 30 7.7
>BC107887-1|AAI07888.1| 237|Homo sapiens REXO2 protein protein.
Length = 237
Score = 139 bits (337), Expect = 8e-33
Identities = 60/115 (52%), Positives = 86/115 (74%)
Frame = +1
Query: 367 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 546
+AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I P+ L+ M++WCK
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 547 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIK 711
HG++GLT+A +S +L +AE L FV P +CPLAGNS++ D+ FL K
Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDK 153
>BC105026-1|AAI05027.1| 237|Homo sapiens REX2, RNA exonuclease 2
homolog (S. cerevisiae) protein.
Length = 237
Score = 139 bits (337), Expect = 8e-33
Identities = 60/115 (52%), Positives = 86/115 (74%)
Frame = +1
Query: 367 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 546
+AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I P+ L+ M++WCK
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 547 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIK 711
HG++GLT+A +S +L +AE L FV P +CPLAGNS++ D+ FL K
Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDK 153
>BC105024-1|AAI05025.1| 237|Homo sapiens small fragment nuclease
protein.
Length = 237
Score = 139 bits (337), Expect = 8e-33
Identities = 60/115 (52%), Positives = 86/115 (74%)
Frame = +1
Query: 367 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 546
+AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I P+ L+ M++WCK
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 547 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIK 711
HG++GLT+A +S +L +AE L FV P +CPLAGNS++ D+ FL K
Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDK 153
>AK223200-1|BAD96920.1| 237|Homo sapiens small fragment nuclease
variant protein.
Length = 237
Score = 139 bits (337), Expect = 8e-33
Identities = 60/115 (52%), Positives = 86/115 (74%)
Frame = +1
Query: 367 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 546
+AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I P+ L+ M++WCK
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 547 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIK 711
HG++GLT+A +S +L +AE L FV P +CPLAGNS++ D+ FL K
Sbjct: 99 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDK 153
>AF151872-1|AAD34109.1| 205|Homo sapiens CGI-114 protein protein.
Length = 205
Score = 139 bits (337), Expect = 8e-33
Identities = 60/115 (52%), Positives = 86/115 (74%)
Frame = +1
Query: 367 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 546
+AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I P+ L+ M++WCK
Sbjct: 7 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66
Query: 547 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIK 711
HG++GLT+A +S +L +AE L FV P +CPLAGNS++ D+ FL K
Sbjct: 67 EHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDK 121
>CR533500-1|CAG38531.1| 237|Homo sapiens DKFZP566E144 protein.
Length = 237
Score = 139 bits (336), Expect = 1e-32
Identities = 60/115 (52%), Positives = 85/115 (73%)
Frame = +1
Query: 367 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIVINLPEVTLNKMNNWCK 546
+AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP+++I P+ L+ M++WCK
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 547 VQHGETGLTEACLKSDTSLAEAERIILKFVSNHVPEKICPLAGNSIYMDRMFLIK 711
HG +GLT+A +S +L +AE L FV P +CPLAGNS++ D+ FL K
Sbjct: 99 EHHGRSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDK 153
>BC003502-1|AAH03502.1| 79|Homo sapiens REXO2 protein protein.
Length = 79
Score = 66.1 bits (154), Expect = 1e-10
Identities = 27/40 (67%), Positives = 36/40 (90%)
Frame = +1
Query: 367 IAQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATG 486
+AQR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A G
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEG 78
>BC021711-1|AAH21711.1| 367|Homo sapiens apolipoprotein B mRNA
editing enzyme, catalytic polypeptide-like 4 (putative)
protein.
Length = 367
Score = 34.7 bits (76), Expect = 0.36
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -2
Query: 233 YMLNVTACHYTKKNEINSCTTLHYIHTISEIYLHQYYLY*SNYNHDQVY*IALYINNT 60
Y L ++ +K +SCT +YIH S ++ YL + YN+D + I LY NN+
Sbjct: 69 YELKTSSGSLVQKGHASSCTG-NYIHPESMLFEMNGYLDSAIYNNDSIRHIILYSNNS 125
>AL137800-10|CAI19483.1| 367|Homo sapiens apolipoprotein B mRNA
editing enzyme, catalytic polypeptide-like 4 (putative)
protein.
Length = 367
Score = 34.7 bits (76), Expect = 0.36
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -2
Query: 233 YMLNVTACHYTKKNEINSCTTLHYIHTISEIYLHQYYLY*SNYNHDQVY*IALYINNT 60
Y L ++ +K +SCT +YIH S ++ YL + YN+D + I LY NN+
Sbjct: 69 YELKTSSGSLVQKGHASSCTG-NYIHPESMLFEMNGYLDSAIYNNDSIRHIILYSNNS 125
>AK098557-1|BAC05332.1| 367|Homo sapiens protein ( Homo sapiens
cDNA FLJ25691 fis, clone TST04456. ).
Length = 367
Score = 34.7 bits (76), Expect = 0.36
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -2
Query: 233 YMLNVTACHYTKKNEINSCTTLHYIHTISEIYLHQYYLY*SNYNHDQVY*IALYINNT 60
Y L ++ +K +SCT +YIH S ++ YL + YN+D + I LY NN+
Sbjct: 69 YELKTSSGSLVQKGHASSCTG-NYIHPESMLFEMNGYLDSAIYNNDSIRHIILYSNNS 125
>AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ42813 fis, clone BRCAN2012355. ).
Length = 180
Score = 30.3 bits (65), Expect = 7.7
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 188 INSCTTLH-YIHTISEIYLHQYYLY*SNYNHDQVY*IALYINNTLLYI 48
IN +++ YI+T +IY++ Y LY Y + Y I + I+ +++Y+
Sbjct: 113 INMYVSIYVYIYTCIQIYIYMYTLYVCTYTYMCTY-IHICIHTSIIYV 159
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,085,636
Number of Sequences: 237096
Number of extensions: 2033273
Number of successful extensions: 7205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7205
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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