Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30e02
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.75 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   7.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   7.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 328 SPKIMMKKNTKVDIAQRIVWMDLEMTGLDIENDHI 432
           S K+M+ + T  DI  R + M LE   ++ EN+ +
Sbjct: 19  SSKVMLTRGTVNDIVSRNITMVLENLLMNYENNQL 53


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 179 CTTLHYIHTISEIY 138
           C TLH+ H   EIY
Sbjct: 467 CNTLHHWHHCPEIY 480


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 402 HFKIHPYNPLSYVNFSIFFHHYFRR 328
           H  +H Y PL      + F H+ +R
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFSQR 157


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 402 HFKIHPYNPLSYVNFSIFFHHYFRR 328
           H  +H Y PL      + F H+ +R
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFSQR 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,193
Number of Sequences: 438
Number of extensions: 4623
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)