Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d24
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785...   109   2e-24
04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864     28   7.2  

>04_04_1250 +
           32077590-32078000,32078132-32078308,32078437-32078561,
           32078629-32078761,32078866-32079015,32079105-32079158,
           32079437-32079532,32080021-32080095,32080723-32080824,
           32080903-32081589,32081686-32081817,32081916-32082023,
           32082170-32082319
          Length = 799

 Score =  109 bits (263), Expect = 2e-24
 Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 13/225 (5%)
 Frame = +3

Query: 18  DKYLRDFLKTHIITDIXXXXXXXXXXXXXSTLQNFIFSMLQDSNTRAAKLSIDILVELYH 197
           D+ ++    +HI+  I               LQN +F+ LQ      AK +  IL +L+ 
Sbjct: 156 DRAVKKLAFSHIVHSIRRMNQTHKNEARNRKLQNILFTFLQGEEESRAKRAFTILCDLHR 215

Query: 198 KNIWNDQKTVNIIADIGCFSKFTKVLVASLKFFLGRDEEEKEQNSD---SDDEIDPRDTM 368
           + +W D +T N I +  CF   +++++A++ F LG +  E+E +SD   S+DE      +
Sbjct: 216 RRVWFDDRTANAICN-ACFHGSSRIMIAAISFLLGYENVEQEDDSDASSSEDEAQNPQII 274

Query: 369 ISN----KFNXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFN------FSALHLINNPQGL 518
           +S     K N                            +        +S L  + +PQG 
Sbjct: 275 LSKEDVYKANHKGTAATKKKKKAKLQRVIRSMKRQQRKSTEDTGSNYYSPLTYLKDPQGF 334

Query: 519 AEKLFKQMEASNDRFEVKLMTLDVVSRLIGLHNLFLFNFYPFIAR 653
           AEKLF +++  N+RFEV++M L V++R IGLH+L L NFYP++ R
Sbjct: 335 AEKLFSRLQKCNERFEVRMMMLKVIARTIGLHHLVLLNFYPYLQR 379


>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
          Length = 203

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 300 GRDEEEKEQNSDSDDEIDPRDTM 368
           G DEEE++Q+++ D+E D  D++
Sbjct: 173 GVDEEEEDQDNEDDEEDDDEDSL 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,125,367
Number of Sequences: 37544
Number of extensions: 236684
Number of successful extensions: 890
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)