Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d24
         (780 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   2.0  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    25   3.5  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   6.1  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 303  RDEEEKEQNSDSDDEIDPRDTMISN 377
            RD+EEK + S+  D     D MIS+
Sbjct: 1291 RDQEEKRRQSEKQDTSAQSDIMISD 1315


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 523 SARPCGLLIRCNAEKL 476
           +A+ CGL+ R NAE+L
Sbjct: 184 TAKSCGLITRTNAERL 199


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 576 MTLDVVSRLIGLHNLFLFNFYPFIARLLLPHQREVTRILQFAAQASHEL 722
           MTL    R+     + LFN    + RL     R+   +L    QA HEL
Sbjct: 737 MTLLKARRVAPQDTVLLFNIALVLQRLATFVLRDEKSVLSVVLQAVHEL 785


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,037
Number of Sequences: 2352
Number of extensions: 10921
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)