Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30d24
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein. 148 5e-36
AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical... 148 5e-36
U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein... 29 4.9
Z79753-6|CAI91165.1| 218|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical pr... 28 6.5
U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical p... 28 6.5
Z46828-3|CAA86858.2| 363|Caenorhabditis elegans Hypothetical pr... 28 8.6
>EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein.
Length = 801
Score = 148 bits (358), Expect = 5e-36
Identities = 85/268 (31%), Positives = 135/268 (50%), Gaps = 10/268 (3%)
Frame = +3
Query: 6 IKCQDKYLRDFLKTHIITDIXXXXXXXXXXXXXSTLQNFIFSMLQDSNTRAAKLSIDILV 185
+K +DK LR FL + I + +QN FS ++DS + A+ + + +
Sbjct: 163 VKVEDKVLRKFLLSSISAHLKRVYHKKKDVKMLGKIQNLCFSKMKDSRSIVARAAQLVCI 222
Query: 186 ELYHKNIWNDQKTVNIIADIGCFSKFTKVLVASLKFFLGRD------EEEKEQNSDSDDE 347
+ + + W D +T N+IA CF K K+ V S+KFFLG + E+ E +SD++D
Sbjct: 223 DAFRRKFWRDARTANVIAQ-ACFHKVAKIQVTSMKFFLGSENENGDAEDSDEMDSDAEDN 281
Query: 348 IDP-RDTMIS--NKFNXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFNFSALHLINNPQGL 518
++ M S N N A+ + +PQ
Sbjct: 282 TKTLKEVMTSFRNVKKTRKREKNVERAKKMISKKKKAKKEGRSKECNLMAIQSLYDPQEF 341
Query: 519 AEKLFKQMEASN-DRFEVKLMTLDVVSRLIGLHNLFLFNFYPFIARLLLPHQREVTRILQ 695
++LF +EA D FEV+L + + +R+IG+H L +FY ++ R L P QR+VT+IL
Sbjct: 342 VDRLFGAVEAKKMDNFEVRLFKIALCARIIGIHRLHTLSFYSYLHRFLQPKQRDVTKILL 401
Query: 696 FAAQASHELVPYEVIEPVMRAIANNFIT 779
+AAQA HE+VP + +E ++R IANNF+T
Sbjct: 402 YAAQACHEMVPPDTVEQLIRVIANNFVT 429
>AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical
protein Y39B6A.14 protein.
Length = 801
Score = 148 bits (358), Expect = 5e-36
Identities = 85/268 (31%), Positives = 135/268 (50%), Gaps = 10/268 (3%)
Frame = +3
Query: 6 IKCQDKYLRDFLKTHIITDIXXXXXXXXXXXXXSTLQNFIFSMLQDSNTRAAKLSIDILV 185
+K +DK LR FL + I + +QN FS ++DS + A+ + + +
Sbjct: 163 VKVEDKVLRKFLLSSISAHLKRVYHKKKDVKMLGKIQNLCFSKMKDSRSIVARAAQLVCI 222
Query: 186 ELYHKNIWNDQKTVNIIADIGCFSKFTKVLVASLKFFLGRD------EEEKEQNSDSDDE 347
+ + + W D +T N+IA CF K K+ V S+KFFLG + E+ E +SD++D
Sbjct: 223 DAFRRKFWRDARTANVIAQ-ACFHKVAKIQVTSMKFFLGSENENGDAEDSDEMDSDAEDN 281
Query: 348 IDP-RDTMIS--NKFNXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFNFSALHLINNPQGL 518
++ M S N N A+ + +PQ
Sbjct: 282 TKTLKEVMTSFRNVKKTRKREKNVERAKKMISKKKKAKKEGRSKECNLMAIQSLYDPQEF 341
Query: 519 AEKLFKQMEASN-DRFEVKLMTLDVVSRLIGLHNLFLFNFYPFIARLLLPHQREVTRILQ 695
++LF +EA D FEV+L + + +R+IG+H L +FY ++ R L P QR+VT+IL
Sbjct: 342 VDRLFGAVEAKKMDNFEVRLFKIALCARIIGIHRLHTLSFYSYLHRFLQPKQRDVTKILL 401
Query: 696 FAAQASHELVPYEVIEPVMRAIANNFIT 779
+AAQA HE+VP + +E ++R IANNF+T
Sbjct: 402 YAAQACHEMVPPDTVEQLIRVIANNFVT 429
>U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein
10, isoform a protein.
Length = 559
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 612 VDRSILTQHLRSLTLPQIYHLKPPSV*IISLQDLA 508
VD SI TQ L LPQ H++P +++ Q +A
Sbjct: 437 VDNSIATQDLMEKLLPQNAHMRPSDDELLNRQPIA 471
>Z79753-6|CAI91165.1| 218|Caenorhabditis elegans Hypothetical
protein F20G2.6b protein.
Length = 218
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 213 DQKTVNIIADIGCFSKFTKVLVASLKFFLGRDEEEKEQNSDSDDEIDPRDTMIS-NKFN 386
D V +IA + F+ F ++ FF RD+ + + I DT IS N FN
Sbjct: 51 DMSRVLVIAPLVVFALFFLTILMLRSFFSMRDKRRRARRGCPQSSIANNDTEISCNNFN 109
>Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical
protein T21B10.4 protein.
Length = 418
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 468 PAFNFSALHLINNPQGLAEKLFKQMEASNDRFEVKLMTLDV 590
P F F+ +HL+ +P G + + F + TL+V
Sbjct: 69 PKFRFAGVHLVRDPNGRFPPKIMTIREDDHSFNANIFTLNV 109
>U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical
protein C33H5.17 protein.
Length = 432
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 297 LGRDEEEKEQNSDSDDEIDPRD 362
L ++EEK Q S DDEID +D
Sbjct: 43 LMEEDEEKTQKSPDDDEIDEQD 64
>Z46828-3|CAA86858.2| 363|Caenorhabditis elegans Hypothetical
protein R03D7.5 protein.
Length = 363
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 144 SNTRAAKLSIDILVELYHKNIWNDQKTVNIIA----DIGCFSKFTKVLVASLKFFLGRDE 311
SN ++ I E+ KN+W+D +T ++ +I SK +++L +F R+
Sbjct: 32 SNVYCGQMISPIEKEVAVKNVWSDTETRHLATSEYPEIQILSKLFHPAISNLLYFYSRNA 91
Query: 312 EEKEQN 329
+K N
Sbjct: 92 NDKVIN 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,705
Number of Sequences: 27780
Number of extensions: 245904
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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