Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d19
         (107 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   3.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    18   9.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    18   9.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -2

Query: 73  YYLNTHYLNTR*HHSV 26
           Y+L+ H+++   HH++
Sbjct: 274 YHLDNHHVHHANHHAI 289


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 80 F*VLFKHTLFKHTLTPLRPT 21
          F VLF    F  T T L+PT
Sbjct: 19 FGVLFVLFSFLRTRTKLQPT 38


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 80 F*VLFKHTLFKHTLTPLRPT 21
          F VLF    F  T T L+PT
Sbjct: 19 FGVLFVLFSFLRTRTKLQPT 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,545
Number of Sequences: 438
Number of extensions: 248
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)