Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d18
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    29   0.20 
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   0.82 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   1.9  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   3.3  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   4.4  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    24   7.6  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    24   7.6  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    24   7.6  

>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 29.1 bits (62), Expect = 0.20
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 2   RRTYDMMF*KCF*ELLIYFGVHXNLINEAHEDIISKELLKTIKMKA-VLATVISLALTTV 178
           RRT D +  K +   +++F    N   E    ++S     +++  +   A V++L L   
Sbjct: 162 RRTLDQIAAKLYFYYILFFE-KCNRSVECRNTLLSVHRTASLRHDSETQAMVLTLLLRNY 220

Query: 179 VIGNAYYQKKQFYPSIVYLTNSNPSMAVMY 268
           +  N Y Q  +      +LTN++ ++A+ Y
Sbjct: 221 IQFNLYDQADRLVSKTSFLTNASNNLAIRY 250


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
 Frame = +2

Query: 77  INEAHEDIISKELLK--TIKMKA----VLATVISLALTTVVIGNAYYQKKQFYP--SIVY 232
           ++E   D+ SK + K  ++++ +    + +TVIS +L+TVVIGN    K + YP  S   
Sbjct: 372 VDEEDTDVQSKPVRKNPSVELNSTDTLLSSTVISKSLSTVVIGNE-TGKSESYPATSTRS 430

Query: 233 LTNSNPSMAVMYLQAFI 283
             + +PS +  Y  A I
Sbjct: 431 FNDISPSSSSSYSTAQI 447


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 118 KNYQNEGS--VSDGDQSRANHCGYRQCILPKETVLPFDSLFNKFXSK 252
           +NY  EG   V    +++ +H GY +CIL  ++   ++    K  S+
Sbjct: 276 RNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSE 322


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 137 AVLATVISLALTTVVIGNAYYQKKQ 211
           +VLAT++S A T ++IG+  Y  ++
Sbjct: 238 SVLATLLSFAPTLLIIGSVIYLSRR 262


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 224 IVYLTNSNPSMAVMYLQAFILVLLEGKXLRKIFFGQ 331
           + ++T + PS+ V+YL+A  ++L +    + + F Q
Sbjct: 209 VQWITETFPSLEVLYLEANEIILSKATSFKNLQFLQ 244


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 106 EGAPKNYQNEGSVSDGDQSRAN 171
           +G  K+ +NE  V+D D S  N
Sbjct: 201 KGVEKSEENEDGVTDNDSSNVN 222


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 71  NLINEAHEDIISKELLKTIKMKAVLAT 151
           N INE  +   +KE+L+TI  K  L T
Sbjct: 330 NKINEVEKGSTNKEILETILRKPNLQT 356


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 56  NILIVLKNIFKTSYRMFA 3
           N L+++K I+K  +R+FA
Sbjct: 170 NFLVIVKAIYKQMFRIFA 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,208
Number of Sequences: 5004
Number of extensions: 22631
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)