Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d18
         (345 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB058713-1|BAB47439.1|  579|Homo sapiens KIAA1810 protein protein.     92   5e-19
BC030530-1|AAH30530.1|  617|Homo sapiens synovial apoptosis inhi...    91   9e-19
AF317634-1|AAL26903.1|  616|Homo sapiens HRD1 protein.                 91   9e-19
AB085847-1|BAC24801.1|  616|Homo sapiens HRD1 protein.                 91   9e-19
AB024690-1|BAC57449.1|  617|Homo sapiens Synoviolin1 protein.          91   9e-19

>AB058713-1|BAB47439.1|  579|Homo sapiens KIAA1810 protein protein.
          Length = 579

 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 44/84 (52%), Positives = 61/84 (72%), Gaps = 4/84 (4%)
 Frame = +2

Query: 104 SKELLKTIKMKAVLATVI----SLALTTVVIGNAYYQKKQFYPSIVYLTNSNPSMAVMYL 271
           S+  +  ++ +A+  T +    SLALT  V+ +AYY K QFYP++VYLT S+PSMAV+Y+
Sbjct: 3   SRRWVPGLRARAMFRTAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYI 62

Query: 272 QAFILVLLEGKXLRKIFFGQLRPA 343
           QAF+LV L GK + K+FFGQLR A
Sbjct: 63  QAFVLVFLLGKVMGKVFFGQLRAA 86


>BC030530-1|AAH30530.1|  617|Homo sapiens synovial apoptosis
           inhibitor 1, synoviolin protein.
          Length = 617

 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 41/62 (66%), Positives = 51/62 (82%)
 Frame = +2

Query: 158 SLALTTVVIGNAYYQKKQFYPSIVYLTNSNPSMAVMYLQAFILVLLEGKXLRKIFFGQLR 337
           SLALT  V+ +AYY K QFYP++VYLT S+PSMAV+Y+QAF+LV L GK + K+FFGQLR
Sbjct: 11  SLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLR 70

Query: 338 PA 343
            A
Sbjct: 71  AA 72


>AF317634-1|AAL26903.1|  616|Homo sapiens HRD1 protein.
          Length = 616

 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 41/62 (66%), Positives = 51/62 (82%)
 Frame = +2

Query: 158 SLALTTVVIGNAYYQKKQFYPSIVYLTNSNPSMAVMYLQAFILVLLEGKXLRKIFFGQLR 337
           SLALT  V+ +AYY K QFYP++VYLT S+PSMAV+Y+QAF+LV L GK + K+FFGQLR
Sbjct: 11  SLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLR 70

Query: 338 PA 343
            A
Sbjct: 71  AA 72


>AB085847-1|BAC24801.1|  616|Homo sapiens HRD1 protein.
          Length = 616

 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 41/62 (66%), Positives = 51/62 (82%)
 Frame = +2

Query: 158 SLALTTVVIGNAYYQKKQFYPSIVYLTNSNPSMAVMYLQAFILVLLEGKXLRKIFFGQLR 337
           SLALT  V+ +AYY K QFYP++VYLT S+PSMAV+Y+QAF+LV L GK + K+FFGQLR
Sbjct: 11  SLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLR 70

Query: 338 PA 343
            A
Sbjct: 71  AA 72


>AB024690-1|BAC57449.1|  617|Homo sapiens Synoviolin1 protein.
          Length = 617

 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 41/62 (66%), Positives = 51/62 (82%)
 Frame = +2

Query: 158 SLALTTVVIGNAYYQKKQFYPSIVYLTNSNPSMAVMYLQAFILVLLEGKXLRKIFFGQLR 337
           SLALT  V+ +AYY K QFYP++VYLT S+PSMAV+Y+QAF+LV L GK + K+FFGQLR
Sbjct: 11  SLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLR 70

Query: 338 PA 343
            A
Sbjct: 71  AA 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,505,990
Number of Sequences: 237096
Number of extensions: 701717
Number of successful extensions: 4916
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4916
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)