Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d18
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.4  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    20   7.2  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    20   7.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    20   7.2  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    20   7.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 47   LIYFGVHXNLINEAHEDIISKEL 115
            ++YF +    INE H  ++S  +
Sbjct: 1529 ILYFTIQYRPINEFHWTLVSNSV 1551


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 47   LIYFGVHXNLINEAHEDIISKEL 115
            ++YF +    INE H  ++S  +
Sbjct: 1525 ILYFTIQYRPINEFHWTLVSNSV 1547


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 VISLALTTVVIGNAYYQKKQFY 217
           +IS  L   +  N  Y+K Q+Y
Sbjct: 303 IISSLLNNTIHNNNNYKKLQYY 324


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 VISLALTTVVIGNAYYQKKQFY 217
           +IS  L   +  N  Y+K Q+Y
Sbjct: 314 IISSLLNNTIHNNNNYKKLQYY 335


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 VISLALTTVVIGNAYYQKKQFY 217
           +IS  L   +  N  Y+K Q+Y
Sbjct: 314 IISSLLNNTIHNNNNYKKLQYY 335


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 VISLALTTVVIGNAYYQKKQFY 217
           +IS  L   +  N  Y+K Q+Y
Sbjct: 303 IISSLLNNTIHNNNNYKKLQYY 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,652
Number of Sequences: 438
Number of extensions: 1367
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)