Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30d15
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 29 0.26
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 29 0.34
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.45
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 29 0.45
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 28 0.78
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.78
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 1.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 1.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 2.4
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 2.4
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 2.4
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 3.1
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 3.1
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 26 3.1
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 26 3.1
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 4.2
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 25 4.2
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 4.2
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.2
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 5.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 5.5
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 5.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 7.3
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 7.3
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 25 7.3
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.3
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 24 9.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 9.6
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 24 9.6
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 24 9.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 24 9.6
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 24 9.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 24 9.6
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 24 9.6
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.26
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 137 KELARLKKMLGVKDEEKPAGSEV 205
+E+A L+KMLG+K ++K A S++
Sbjct: 115 REIAHLEKMLGIKSKDKSAHSKI 137
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 29.1 bits (62), Expect = 0.34
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +2
Query: 131 AVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSS 310
A KE+ RL ++ SE+ ++E+V + K + L D E ++E+V +
Sbjct: 77 ATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEE--LTDEESEDEEVYDPA 134
Query: 311 DDENVVVDSEGGKKRVFNTKT 373
E ++ SE + ++T
Sbjct: 135 RGEGIISTSESSDESDAESET 155
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 0.45
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 257 KKVLEDI-EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQY 397
K VLED+ +KDNE SD+E+ V D E F+ K N +Y
Sbjct: 160 KGVLEDVLKKDNELKFNDSDEEDEVDDEEIESFNSFSRKMQTISNSRY 207
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 28.7 bits (61), Expect = 0.45
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +2
Query: 86 SRWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKV 265
SR +R+ R + R A + L R +KM + D G V + + + D+ SK V
Sbjct: 481 SRAERRQRFRQSLRAAERILVRSQKMNSLDDMSY--GLLVFQVNLMAIMSM-DMGLSKDV 537
Query: 266 LEDIEKDNEDVEMSS 310
ED+ +D ED++ SS
Sbjct: 538 AEDLLQDLEDIQSSS 552
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 27.9 bits (59), Expect = 0.78
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 263 VLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 388
+LED E N D E DD++++ + +N+K+LK++N
Sbjct: 6 MLEDDE--NYDFEFEDDDDDMIEPYVDVENCYYNSKSLKEEN 45
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 0.78
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 243 SPASRNITCSDSITSLPAGFSSSLTPSIFFNRANS--FTAYRSRLIALH 103
+PAS T + S++S + SSS TPS + A S + S LIAL+
Sbjct: 749 TPASSTSTTTSSVSSRQSSSSSSFTPSSAISTAKSSFVLSTLSILIALY 797
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.1 bits (57), Expect = 1.4
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +2
Query: 68 MAKSIRSRWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMES-EQVIFLDAGD 244
+ S+R + ++ ++ + RY+++ +A +K VK E + +E + + D
Sbjct: 823 LQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESEVKYNELNEQVKTLEGYVETVLEKFND 882
Query: 245 LKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRV 358
LK KV E + + NV V S+ K V
Sbjct: 883 LKIENKVPETAPDVVPSSYPPAAESNVSVSSDTSTKDV 920
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 240 PASRNITCSDSITSLPAGFSSSLTPSIF 157
P S + S SIT++ +G SSS PS F
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTF 573
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 1.8
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Frame = +2
Query: 71 AKSIRSRWKRKCRAIKR-ERYAVKE-LARLKKMLG--VKDEEKPAGSEVMESEQVIFLDA 238
+KS+R+ K RAI +R+ V E +++L + +K K E E VI +D
Sbjct: 1582 SKSVRT----KLRAISTIQRFPVSEWVSKLDTHVRNCIKFSHKQNLEEDFIHEPVIDVDE 1637
Query: 239 GDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEG 343
+ SK DI+ D ED+E+ +N +DS G
Sbjct: 1638 FAISSSK----DIDAD-EDLEIIGSSDNKAIDSNG 1667
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 209 ESEQVIFLDAGDLKKS-KKVLEDIEKDN 289
E +++ DA ++K+ K+V+ED+EK+N
Sbjct: 1600 EEHSIVYEDAKLMEKTLKEVIEDLEKNN 1627
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 209 ESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSS 310
+ E + +L D+ K KK E +EK N+D + S
Sbjct: 54 QKEFLPYLTTEDVGKHKKTKESLEKSNDDSQKIS 87
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 92 WKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVME 211
WK K IK E V+++ LKK ++ E P S + +
Sbjct: 211 WKNKVEQIKNESRLVRKIQELKK--SYQESEHPIVSSIRD 248
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 152 LKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVV 331
LK +G+K+ E S +SE ++F + D K L D+E + + S +V
Sbjct: 215 LKSYIGLKNMEYRVRSSFNQSETIVFSGSED---GKVYLWDLENETQITSTSVVGTPIVT 271
Query: 332 D 334
D
Sbjct: 272 D 272
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 284 DNEDVEMSSDDENVVVDSEGGKK 352
+ EDVEM S+D++ +SE G K
Sbjct: 1322 NEEDVEMRSEDQSDTSESEVGSK 1344
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 239 GDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQ 394
GDLKK +V + E D+ S E + S K R++ + G+
Sbjct: 17 GDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGK 68
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 272 DIEKDNEDVEMSSDDENVVVDSE 340
D+E+D +DVE SS++E V DS+
Sbjct: 351 DVEEDEDDVESSSNEE--VSDSD 371
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 246 KSPASRNITCSDS-ITSLPAGFSSSLTPSIFFNRANSFTAYRS 121
++P + I+ +S ++S P +SSLTP N A ++A+RS
Sbjct: 175 QTPRAAAISKRESGVSSEPRARTSSLTPGNTPNSAKQWSAFRS 217
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 89 RWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLK-KSKKV 265
RW + Y + + +K + DE ++ES ++ +L+ + K +
Sbjct: 14 RWSALVLGLGAGMYEHRSHIQCQKQKEI-DENYHRQESLIESAKIAYLNTKNTPPKEDSM 72
Query: 266 LEDIEKDNEDVEM 304
L +++KD+ED +M
Sbjct: 73 LPNLKKDSEDFDM 85
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 240 PASRNITCSDSITSLPAGFSSSLTP 166
P R+ + S+ +TS+ SSSL+P
Sbjct: 359 PTKRSFSMSEIVTSMQMSISSSLSP 383
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 3 LSRDYLQKRVAL--LQNIFVFKTQWRNRLGADGSENAGRSNENGM 131
LS ++ +K+ L LQN + +T R +G+DGS + E M
Sbjct: 244 LSENFQRKQEILSGLQNNVILRTNNRKPVGSDGSNSNFNGGEEQM 288
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 5.5
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +2
Query: 107 RAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKD 286
RA ++E+ E+A + +LG++ E +E+ME + V+ +L+ S + ++ EKD
Sbjct: 102 RARRKEKNRRDEVA--EAILGLQHEIVRI-NEIMEKQFVLQKKKNELQSSTEEIDSTEKD 158
Query: 287 NEDV 298
+++
Sbjct: 159 FDEL 162
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 173 KDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMS--SDDENVVVDSEG 343
K+EE+P SE +++ + D D ++ L + ++ ++++ S+D + + +EG
Sbjct: 503 KEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKVTEPSNDADKAIVAEG 561
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 5.5
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = +2
Query: 209 ESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 388
E + IF A D K +E + K+ E D V + K+R+ K LKD
Sbjct: 258 ERARTIFKYAIDFMPRSKSME-LYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSP 316
Query: 389 GQYPVWL 409
Y WL
Sbjct: 317 YDYDTWL 323
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.0 bits (52), Expect = 5.5
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2
Query: 248 KKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 388
K +KVL+ ++ + E+ +++S + V+VDS+ ++ N +KD N
Sbjct: 63 KVVEKVLDTLKAEVEE-KLASSQDLVLVDSDMEEQSDSNLMEVKDTN 108
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 97 LPSAPNRFRHCVLKTK 50
LPS PNR H VL K
Sbjct: 598 LPSRPNRMNHSVLNEK 613
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 86 SRWKRKCRAIKRERYAV 136
SRWK+K + +K E Y V
Sbjct: 119 SRWKKKIQLLKSEDYTV 135
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 183 RNQLEVRLWNLSKL 224
RNQ ++ +WNLSKL
Sbjct: 325 RNQPDIIIWNLSKL 338
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 243 SPASRNITCSDSITSLPAGFSSSLTPSIFFNRANSFTA 130
+P+S + T S S +S SSS+T SI + ++S ++
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSS 185
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/41 (24%), Positives = 25/41 (60%)
Frame = +2
Query: 233 DAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKR 355
D +++++++ + E++ ED E +DE +S GG+++
Sbjct: 96 DEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRK 136
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 224 IFLDAGDLKKSKKVLEDIEKDNEDVEMSSD 313
IF + GDLKK + +D+ + V+ S+
Sbjct: 166 IFSETGDLKKGIAIFQDLSDAEQAVQYLSN 195
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -3
Query: 186 FSSSLTPSIFFNRANSFTAYRSRLIALHF 100
F++ P ++ R + A+R+R + +HF
Sbjct: 1009 FATQNPPGVYAGRKHLSRAFRNRFLEIHF 1037
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 237 ASRNITCSDSITSLPAGFSSSLTPSIFFN 151
AS +IT T++ GF L P IFFN
Sbjct: 269 ASESITGHS--TTIDVGFERFLAPEIFFN 295
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 245 LKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTK 370
L K KK+L+ +EKD++ E + +E+ + S+ F K
Sbjct: 281 LGKLKKILKMLEKDSKKDEKTKFEESDICISQCSSMGSFGPK 322
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 386 SDLSKFSY*KLFSCRLHYRPQRFHHLNSF 300
+DL +F+ K +LH+ P R H L F
Sbjct: 768 ADLLRFNALKARKKQLHFGPSRIHTLGLF 796
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 448 FTVFIYFGDLTFVQPNRVLSVLIFQSFR 365
FTVF G T PN +L+ L ++ R
Sbjct: 529 FTVFRTMGGSTVQAPNSLLNTLFIENLR 556
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 269 EDIEKDNEDVEMSSDDENVVVDSEGGKKRV 358
EDI+++NE E +DD VV+D + +V
Sbjct: 724 EDIKRENETGEAPADD--VVMDEDASVSQV 751
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 9.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +2
Query: 173 KDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIE----KDNEDVEMSS-DDENVVVDS 337
K++ K E + L++ K+++KVLED+ K V +++ DDEN + S
Sbjct: 235 KEKTKKQLEEEEHGYERFLLESAQSKEARKVLEDLSSSYVKQRPSVLVNTEDDENGIKPS 294
Query: 338 E 340
+
Sbjct: 295 D 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,447
Number of Sequences: 5004
Number of extensions: 32322
Number of successful extensions: 187
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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