Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d12
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    31   0.13 
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    31   0.23 
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    28   1.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   1.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.6  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    27   2.8  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.7  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    26   6.5  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    26   6.5  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   6.5  
SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    25   8.6  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   8.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   8.6  

>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 579 RSVSSASCHVREEGTIPWSGHAFSTGGPARHKIEHRDV 692
           +   + S H    G + W+ H  S+GG   H I HRDV
Sbjct: 324 KKTRTMSGHTERVGALSWNDHVLSSGGRDNH-ILHRDV 360


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 525 LKENTQFRRHQVHFERFERSVSSASCHVREE 617
           L++   F R   H ERFER  +S + HV+ E
Sbjct: 18  LRQCEDFHRLSTHIERFEREQASLNMHVKTE 48


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 255 SGKEHWSSHTGTSRWCTTPRRAGIGGVLSKKW-RWF 359
           SG +H+     +  WC+T     + G+LS ++ +WF
Sbjct: 111 SGPKHYEYSLKSKTWCSTRDEGTLLGILSSEFSKWF 146


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 339  TERRQFLHVGEWCTTDLYLYVKTSAPSRFHPFFDNFLPV 223
            T R  FLH+  W   DLY    +   SR   FF NFL +
Sbjct: 1429 TFRPLFLHLHSWALEDLYETDPSGIVSR-QTFFYNFLTI 1466


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 317 TSGSGAPPTCTCM*RPVLLPAFTHSSITFFLSATFRDICSPVVPPTSTHLKPAS 156
           T+ + APPT        ++P  TH + T  +  T     + VVPPT TH    S
Sbjct: 104 TTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT-THANTTS 156


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 519 GGLKENTQFRRHQVHFERFERSVSSASCHVREEGTIPWSGHAFSTGGPARHKIEHRDVFQ 698
           G  +E+ Q    +V     E+ V SAS       +   S    ST   ++H   HRD+FQ
Sbjct: 94  GNPQESKQEPNLEVQQTEKEKDVDSASAENESINSSSSSSKECSTQTQSKHYNLHRDIFQ 153


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 497 LTCLPSSRRPQRKYPISQASSSLRTI*AKRLKCFVPCPRRRHYSLERTRF*HRR 658
           L+ L +S   QRK   S  S++ + + +K+L+  +P P   H  L R R   RR
Sbjct: 146 LSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERLIPVPHGHH--LTRLRKKRRR 197


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 496 SQPESCWECGNIAQAISVPRRL 431
           S P  C+ CGN+A  + V   L
Sbjct: 256 SAPNYCYRCGNVASVMKVDESL 277


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 679 SILCRAGPPVLKACPLQGIVPSSRTWHEAL 590
           +++CR  P V    PL   VP  +TW EAL
Sbjct: 337 TLVCRRLPVVFSVKPL---VPDIKTWKEAL 363


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 358 NQRHFFDRTPPIPARRGVVHHRLVP 284
           N+ + +D+TP I AR+   H R++P
Sbjct: 99  NEGNEYDQTPDISARKRRKHFRMLP 123


>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 250 VKAGRSTGLHIQVQVGGAPLPDVQELAAFCQKNGVGSILTLPELYFKPS 396
           + A  +  L   V VG +     +++   CQ+N V  +      Y KPS
Sbjct: 39  IPAAETKDLGASVTVGNSLTRAFRQVDRICQRNNVPRLFRSQRFYEKPS 87


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 567 ERFERSVSSASCHVREEGTIPWSGHAFSTGGPARHKIEHRDVFQSLPENSSR 722
           +R   S++SA  +    G +  S   FS+ G  +++         +P NSSR
Sbjct: 5   QRANDSMNSAKQYSSSAGAVHNSDEPFSSSGAPQNRNFDTSYTSEIPSNSSR 56


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 600 TKHLRRFAQIVRSELDACEIGYFL 529
           TK L R  Q++  ELD CE G  L
Sbjct: 503 TKDLARQVQVLLHELDLCENGIVL 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,589
Number of Sequences: 5004
Number of extensions: 74023
Number of successful extensions: 217
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)