Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d12
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.56 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +1

Query: 262 RSTGLHIQVQVG 297
           RSTGLH+Q++VG
Sbjct: 509 RSTGLHLQIRVG 520


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 52  IDFETRGLMPPVF 90
           + F+T GL+PPV+
Sbjct: 216 LGFDTEGLLPPVW 228


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = +3

Query: 189 YDR-RAYVSKRSGQEESYRRMGESGKEHWSSHTGTSR 296
           Y R R    K    E  YR+ GE+ KE     T   R
Sbjct: 272 YSRSREREQKSYKNEREYRKYGETSKERSRDRTERER 308


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 181 VGGTTGEHMSLNVADRKKVIEEWVKAG 261
           +GGTT  H        +K  E WV+ G
Sbjct: 150 LGGTTLHHGMAYHRGHRKDYERWVQQG 176


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 539 PISQ--ASSSLRTI*AKRLKCFVPCPRRRHYS 628
           P+ Q  +SS+  T     ++CF   PR+ H S
Sbjct: 279 PVKQHRSSSASTTCSGHTVRCFTGGPRKSHES 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,427
Number of Sequences: 438
Number of extensions: 5251
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)