Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d11
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    28   1.2  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   2.1  
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    27   3.7  
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    27   3.7  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   4.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.4  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   6.4  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   6.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   6.4  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 167 CYLNLVSHKAKGCRYYYFI 111
           C LNL S+K  GCR +Y I
Sbjct: 382 CSLNLASNKITGCRTFYHI 400


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 170 SCYLNLVSHKAKGCRYYYFIRC*AK 96
           SC LN+V HK K    YY IR  AK
Sbjct: 316 SCSLNIVFHKHKKVCTYYMIRHYAK 340


>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 415 HGIEKRHRRG-GRALGEHGQSGFKTFLKRLLCGRIFRLPVQGLRQR 281
           +GI  R R    R   EHGQ    T+LK    G I  + V G  Q+
Sbjct: 5   YGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQK 50


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 415 HGIEKRHRRG-GRALGEHGQSGFKTFLKRLLCGRIFRLPVQGLRQR 281
           +GI  R R    R   EHGQ    T+LK    G I  + V G  Q+
Sbjct: 5   YGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQK 50


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 576 ERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCI 463
           ERPSA   R    I  + D+     SG    A+FS+ +
Sbjct: 40  ERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
 Frame = +2

Query: 302  RKPEYSTAKEAFEKCLKSGLTVFAQ---GAAATPVPLLNAMTEVGKSGSLRDIKVVHMHT 472
            ++ EY   K   EKCL S  +   Q        P    +  +E+ K  +L       +++
Sbjct: 1110 KEKEYKRLKGVIEKCLSSVASRINQIKCDWVTDPEKFESCTSEISKFRTLLSSDYTELYS 1169

Query: 473  EKDAAYVTPECKD 511
            E D+ Y+     D
Sbjct: 1170 EFDSIYLNSSTSD 1182


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 3   TSQYSTVFVTPTYLSP 50
           +S++S +F TPT+LSP
Sbjct: 447 SSRHSGIFATPTFLSP 462


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 45  SPVPNYIYWLLGVGARVLSLTTNKIVIT 128
           SP+P + +   G+   V +LTTN   +T
Sbjct: 302 SPIPGFYHGFQGLATEVGTLTTNLFTLT 329


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 209 LHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKP 310
           LH GKLS  ++    D  Y  +  S   PL  +P
Sbjct: 683 LHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEP 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,395
Number of Sequences: 5004
Number of extensions: 58899
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)