Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30d10
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 202 2e-53
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 30 0.23
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.2
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 2.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.9
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.8
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 5.0
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 6.6
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 8.8
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 8.8
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 202 bits (494), Expect = 2e-53
Identities = 99/185 (53%), Positives = 133/185 (71%), Gaps = 2/185 (1%)
Frame = +2
Query: 35 KIIKASGAEADSFETSISQALVELETXS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 208
KI+K S ++ + ++Q L +LE+ S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 209 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 388
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 389 YNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSVYKKLTGREV 568
+NAILED+VFP EI+GKR R DG + IKV LD T+++ + +F SVY KLTG+ V
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183
Query: 569 TFEFP 583
TFEFP
Sbjct: 184 TFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 30.3 bits (65), Expect = 0.23
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 371 RTLTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTF-QSVYK 547
++L + Y+ + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 548 KLTGREVTFEFP 583
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 327 LGLGRILRSPTKTTCLPLNFFSSSRTS 247
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 2.9
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 11/173 (6%)
Frame = +2
Query: 95 LVELETX--SDLKAQLRELYIT-KAKEIELHNKKSII--IYVPMPKLKAFQKIQIRLVRE 259
L+E+E+ S L ++ L + K E E++N + I + +L+ + + I +
Sbjct: 875 LIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLNHEFDRLEREKSVAITAINH 934
Query: 260 LEKK---FSGKHVVFVGDRKILPKPSHKTRVANKQK---RPRSRTLTSVYNAILEDLVFP 421
LEK+ G+ F I S R +Q +PR ++ N + D++
Sbjct: 935 LEKENDWIDGQKQHFGKQGTIFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG 994
Query: 422 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSVYKKLTGREVTFEF 580
E ++R S + +H DK + +D F+ + T REV F
Sbjct: 995 VEKKEAKLR-----SMIKTIHRDKKKIQDTVKSIDRFKRSALEKTWREVNSSF 1042
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 197 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 289
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 355 KEATLKDIDLCVQCYPRGLGLPC 423
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -3
Query: 600 FTNKVRGNSKVTSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLT-LMRLPTIS 424
F +K+R +K R + L K ++ + CW+L + EP+N +R I+
Sbjct: 817 FESKLRQENKPKIRAMKIL----KSASNAVVTACWYLFYVAVQQIEPTNSQYFLRTLDIT 872
Query: 423 AGKTKSSRIALYTEV 379
K +A + +
Sbjct: 873 LNNEKLKSVAKFWRI 887
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 317 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 442
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 373 P*AWPLLFVSNTSFVAGLRQDLTVSN 296
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 504 VCWFLSKCTLMSCEPSNLTLMR 439
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,960
Number of Sequences: 5004
Number of extensions: 46022
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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