Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30d10
(617 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 28 0.084
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 28 0.084
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.59
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.4
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 4.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.3
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.9 bits (59), Expect = 0.084
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 377 LTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSVYK 547
L S YN ++ +V ++++ R+ +KL SQLI V+L KNQ T V+ YK
Sbjct: 36 LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.9 bits (59), Expect = 0.084
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 377 LTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSVYK 547
L S YN ++ +V ++++ R+ +KL SQLI V+L KNQ T V+ YK
Sbjct: 36 LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 25.0 bits (52), Expect = 0.59
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 377 LTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHXVDTFQSVYK 547
L S YN ++ +V + + +++KL SQLI V+L KNQ T V+ YK
Sbjct: 32 LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 85
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 541 IQEANGTRSDLRVPPNLICKPSL 609
+ + G R DLR+PP+ + KP +
Sbjct: 89 VSDYGGVR-DLRIPPHRLWKPDV 110
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.2 bits (45), Expect = 4.2
Identities = 16/78 (20%), Positives = 32/78 (41%)
Frame = +2
Query: 170 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 349
EL KS + +P+P + + + +KK +G F + + + +
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSA 611
Query: 350 KQKRPRSRTLTSVYNAIL 403
K++R ++TL V L
Sbjct: 612 KKERKATKTLAIVLGVFL 629
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 556 GTRSDLRVPPNLICKPSL 609
G DLR+ PN + KP +
Sbjct: 56 GGVKDLRITPNKLWKPDI 73
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 556 GTRSDLRVPPNLICKPSL 609
G DLR+ PN + KP +
Sbjct: 56 GGVKDLRITPNKLWKPDI 73
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 556 GTRSDLRVPPNLICKPSL 609
G DLR+ PN + KP +
Sbjct: 56 GGVKDLRITPNKLWKPDI 73
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 556 GTRSDLRVPPNLICKPSL 609
G DLR+ PN + KP +
Sbjct: 56 GGVKDLRITPNKLWKPDI 73
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 556 GTRSDLRVPPNLICKPSL 609
G DLR+ PN + KP +
Sbjct: 56 GGVKDLRITPNKLWKPDI 73
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 556 GTRSDLRVPPNLICKPSL 609
G DLR+ PN + KP +
Sbjct: 56 GGVKDLRITPNKLWKPDI 73
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 556 GTRSDLRVPPNLICKPSL 609
G DLR+ PN + KP +
Sbjct: 124 GGVKDLRITPNKLWKPDI 141
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 556 GTRSDLRVPPNLICKPSL 609
G DLR+ PN + KP +
Sbjct: 124 GGVKDLRITPNKLWKPDI 141
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,724
Number of Sequences: 438
Number of extensions: 2716
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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