Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30d07
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 30 0.29
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 30 0.39
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 29 0.90
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 27 2.1
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 27 3.6
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 4.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.8
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 4.8
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 6.3
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 8.4
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 8.4
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 719 QYLHHNQISLSKTAWNLCNKMPFPSSPKQGRLIMTQ 612
Q L H+ +SL + + N+ + P P P+Q +I+T+
Sbjct: 233 QQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEIIITK 268
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 29.9 bits (64), Expect = 0.39
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +2
Query: 83 NNQTKSKGQIINNSLSNNYQMSVRIEKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKY 262
N+ + K + ++L+N + I + E G P WDE+++AL F Q K
Sbjct: 492 NSISTRKEEDAASALANLSAVGRSISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMK- 550
Query: 263 VPTTEKHTKTSLDGRVGFIL 322
+P T + T R F L
Sbjct: 551 MPLTPRRASTGPRPRPTFQL 570
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 28.7 bits (61), Expect = 0.90
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 501 LLELWVMKILQVTLRETKPLFTNWIQLKMGN*RRLSKLCHYQTALLG 641
LL LW + + L +T+PL T + K G R + +C Y A G
Sbjct: 103 LLFLWAIVMNMDALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAFGG 149
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 405 LPSSPSHCMKRNLRSTPTTNWSVVPSTGNMKPTLPSKL 292
LPS PS R TP T +++P G M P K+
Sbjct: 509 LPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 536 NFERNKASLYKLDSAKDGKLEKIIETVSLSNGL 634
N E K + K +G L+ +ET++L NGL
Sbjct: 74 NNEYRKTDVVKNSDTDNGLLKSAVETITLENGL 106
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 535 TWRIFMTHSSSKQPPTRICFA 473
T+R F T SS+K P +CFA
Sbjct: 21 TFRKFTTESSTKSPIADVCFA 41
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 390 SHCMKRN--LRSTPTTNWSVVPSTGNMKPTLPSKLV 289
SH N + + P N S VP+TGN+K L V
Sbjct: 1095 SHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAV 1130
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = +2
Query: 497 LFAGTMGHEDP---PGNFERNKASLYKLDSAKDGK----LEKIIETVSLS 625
L +G E+P PGNF + SLY++ + G+ E+++ET++ S
Sbjct: 1517 LLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKS 1566
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 294 LVFVCFSVVGTYLCIVLSWMLTKYS 220
++F C V+ L ++LSW T+YS
Sbjct: 248 ILFACQLVLDLALLLILSWGYTRYS 272
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 222 YTL*ASKIKLYTNMYQLLKNI 284
Y + A+K K +T YQLLKNI
Sbjct: 717 YHVSATKKKEFTRQYQLLKNI 737
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 8.4
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 125 LSNNYQMSVRIEKITEPLTLGEGPHWDERQ-QALYFVSIQDKTIHKYVPTTEKHTKTSLD 301
L Y M R+ + P L D Q A+ +I+ K + K V + K K SL+
Sbjct: 269 LEKGYMMLFRLVRDRSPYFL------DSLQLHAINLSAIKSKHLQKIVVLSSKG-KVSLE 321
Query: 302 GRVGFILPVEGTTDQFVV 355
+ LP+EGT F V
Sbjct: 322 SPMSPSLPIEGTFRSFRV 339
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 116 NNSLSNNYQMSVRIEKITEPLTLGEGP 196
NN++++ + SV E+ EPL GE P
Sbjct: 62 NNAINSEAEKSVSEEEQDEPLVEGESP 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,997
Number of Sequences: 5004
Number of extensions: 67321
Number of successful extensions: 196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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