Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d06
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.1  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   5.1  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   5.1  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    25   6.8  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   6.8  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 487 RISQLSRPVEALDHSTFQ*FQILCIFVPKL 398
           R S +S P  A   ++ Q   +LC+F+P L
Sbjct: 638 RSSSMSLPPSAGSSTSLQRISLLCVFIPLL 667


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 193 LFASVLNFLDFDLRIQHWLSNSILSFVERMVLS**NSFLYQEKVVSKIVLIFVTVLSLH 17
           LF   LNF DF      ++   +LSF+   VL   + +      V ++  I  T  SLH
Sbjct: 30  LFTGKLNFADFYYNTNPFVVGLLLSFILGNVLWGVSVWTKNTSQVDRLWPILPTAFSLH 88


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 352 QLYSPTDTCAYISLGKVLAQRCIEFGITEMYCDLEP 459
           QLY+P   C   S    L      FG  EMYCD +P
Sbjct: 474 QLYNPVVGCYLSSSSSSLPSW--GFGQIEMYCDPDP 507


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 475 AEKFLEEVVKGGITLQ-EPEVYKKPNPWDQFRPEKPWEVHDE 597
           AEK      K GI    EPE+YKK + W +   ++ W   D+
Sbjct: 184 AEKHEILFSKFGINYNFEPEIYKKGSIWIREPIDQEWHQQDK 225


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 135 DSQC*IRKSKSKKFRTDANSQKTGWISLRET 227
           D +C + K   K F ++ + +KT WI    T
Sbjct: 187 DLRCRVNKKAKKLFGSEPSIEKTNWIEAEFT 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,364
Number of Sequences: 5004
Number of extensions: 57165
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)