Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d06
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134...    32   0.32 
02_02_0736 - 13518432-13518473,13518742-13518795,13518929-135189...    29   4.0  
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428...    27   9.2  

>02_01_0201 -
           1347868-1347925,1348040-1348135,1348447-1348523,
           1349385-1349453,1349576-1349629,1350295-1350350,
           1350487-1350694,1350978-1351066,1351163-1351187
          Length = 243

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -3

Query: 259 SKLICANISFQVSLSDIHPVFWLFASVLNFLDFDLRIQHWLSNSIL 122
           SKL   ++S  V + D +P+FW  A+ L F DF   + H++++ +L
Sbjct: 4   SKLYSDDVSLAVVVVDTNPLFWATAA-LPFADFFAHLIHYVNSLLL 48


>02_02_0736 -
           13518432-13518473,13518742-13518795,13518929-13518980,
           13519907-13520000,13520601-13520811
          Length = 150

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 356 YTAPQIPVRTSASGKFWHKDA*NLELLKCTVI*SLNRAGKLR 481
           Y AP I +R   S K W++D    +LLK  +   + R  +L+
Sbjct: 109 YQAPHISLRIGRSKKDWNRDRSIYQLLKMMIDLEVGRKSRLK 150


>12_02_1155 +
           26541137-26541142,26541244-26542623,26542730-26542852,
           26542996-26543168,26543332-26543572,26543931-26544023,
           26544092-26544232,26544358-26544450,26544633-26544837,
           26544993-26545078,26545532-26545620,26545736-26545820,
           26545898-26545954,26546319-26546399,26547130-26547321
          Length = 1014

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 550 PWDQFRPEKPWEVHDE*DICYFN 618
           PW Q   E  +E +D  D CYFN
Sbjct: 859 PWPQVPEELSFEAYDLIDKCYFN 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,316
Number of Sequences: 37544
Number of extensions: 345047
Number of successful extensions: 788
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)