Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30d06
(627 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533491-1|CAG38522.1| 180|Homo sapiens MRPL18 protein. 100 4e-21
BC001623-1|AAH01623.1| 180|Homo sapiens mitochondrial ribosomal... 100 4e-21
AL139045-3|CAI19751.1| 180|Homo sapiens mitochondrial ribosomal... 100 4e-21
AL135914-8|CAI21852.1| 180|Homo sapiens mitochondrial ribosomal... 100 4e-21
DQ314885-1|ABC40744.1| 273|Homo sapiens oxidised low density li... 30 7.7
BC022295-1|AAH22295.1| 273|Homo sapiens oxidized low density li... 30 7.7
AJ131757-1|CAB38175.1| 273|Homo sapiens LOX1 protein. 30 7.7
AF079167-1|AAC97927.1| 273|Homo sapiens lectin-type oxidized LD... 30 7.7
AF035776-1|AAC82329.1| 273|Homo sapiens oxidized low-density li... 30 7.7
AB102861-1|BAC81565.1| 273|Homo sapiens oxidised low density li... 30 7.7
AB010710-1|BAA24580.1| 273|Homo sapiens lectin-like oxidized LD... 30 7.7
>CR533491-1|CAG38522.1| 180|Homo sapiens MRPL18 protein.
Length = 180
Score = 100 bits (240), Expect = 4e-21
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 148 EFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIHFLNGPVVEVK 327
EF NRNPRNLE + +ARK G+ P R++WH+L + + A V H VV
Sbjct: 47 EFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSAS 106
Query: 328 TSEWALQKQLYSPTDTCAYISLGKVLAQRCIEFGITEMYCDLEPQQGG--KAEKFLEEVV 501
T EWA++K LYS + A S+G+VLAQRC+E GI M P + ++ +
Sbjct: 107 TREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMT 166
Query: 502 KGGITLQEPE 531
+GG+ L+EP+
Sbjct: 167 EGGVVLREPQ 176
>BC001623-1|AAH01623.1| 180|Homo sapiens mitochondrial ribosomal
protein L18 protein.
Length = 180
Score = 100 bits (240), Expect = 4e-21
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 148 EFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIHFLNGPVVEVK 327
EF NRNPRNLE + +ARK G+ P R++WH+L + + A V H VV
Sbjct: 47 EFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSAS 106
Query: 328 TSEWALQKQLYSPTDTCAYISLGKVLAQRCIEFGITEMYCDLEPQQGG--KAEKFLEEVV 501
T EWA++K LYS + A S+G+VLAQRC+E GI M P + ++ +
Sbjct: 107 TREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMT 166
Query: 502 KGGITLQEPE 531
+GG+ L+EP+
Sbjct: 167 EGGVVLREPQ 176
>AL139045-3|CAI19751.1| 180|Homo sapiens mitochondrial ribosomal
protein L18 protein.
Length = 180
Score = 100 bits (240), Expect = 4e-21
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 148 EFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIHFLNGPVVEVK 327
EF NRNPRNLE + +ARK G+ P R++WH+L + + A V H VV
Sbjct: 47 EFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSAS 106
Query: 328 TSEWALQKQLYSPTDTCAYISLGKVLAQRCIEFGITEMYCDLEPQQGG--KAEKFLEEVV 501
T EWA++K LYS + A S+G+VLAQRC+E GI M P + ++ +
Sbjct: 107 TREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMT 166
Query: 502 KGGITLQEPE 531
+GG+ L+EP+
Sbjct: 167 EGGVVLREPQ 176
>AL135914-8|CAI21852.1| 180|Homo sapiens mitochondrial ribosomal
protein L18 protein.
Length = 180
Score = 100 bits (240), Expect = 4e-21
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = +1
Query: 148 EFVNRNPRNLERMRIARKPDGYHLEKPGRKYWHKLVLTPGNRSIIAKVIHFLNGPVVEVK 327
EF NRNPRNLE + +ARK G+ P R++WH+L + + A V H VV
Sbjct: 47 EFTNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSAS 106
Query: 328 TSEWALQKQLYSPTDTCAYISLGKVLAQRCIEFGITEMYCDLEPQQGG--KAEKFLEEVV 501
T EWA++K LYS + A S+G+VLAQRC+E GI M P + ++ +
Sbjct: 107 TREWAIKKHLYSTRNVVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDSMKRLQSAMT 166
Query: 502 KGGITLQEPE 531
+GG+ L+EP+
Sbjct: 167 EGGVVLREPQ 176
>DQ314885-1|ABC40744.1| 273|Homo sapiens oxidised low density
lipoprotein (lectin-like) receptor 1 protein.
Length = 273
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 364 PTDTCAYISLGKVLAQRCI--EFGITEMYCDLEPQ 462
P+ TCAYI G V A+ CI F I + +L Q
Sbjct: 239 PSGTCAYIQRGAVYAENCILAAFSICQKKANLRAQ 273
>BC022295-1|AAH22295.1| 273|Homo sapiens oxidized low density
lipoprotein (lectin-like) receptor 1 protein.
Length = 273
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 364 PTDTCAYISLGKVLAQRCI--EFGITEMYCDLEPQ 462
P+ TCAYI G V A+ CI F I + +L Q
Sbjct: 239 PSGTCAYIQRGAVYAENCILAAFSICQKKANLRAQ 273
>AJ131757-1|CAB38175.1| 273|Homo sapiens LOX1 protein.
Length = 273
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 364 PTDTCAYISLGKVLAQRCI--EFGITEMYCDLEPQ 462
P+ TCAYI G V A+ CI F I + +L Q
Sbjct: 239 PSGTCAYIQRGAVYAENCILAAFSICQKKANLRAQ 273
>AF079167-1|AAC97927.1| 273|Homo sapiens lectin-type oxidized LDL
receptor protein.
Length = 273
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 364 PTDTCAYISLGKVLAQRCI--EFGITEMYCDLEPQ 462
P+ TCAYI G V A+ CI F I + +L Q
Sbjct: 239 PSGTCAYIQRGAVYAENCILAAFSICQKKANLRAQ 273
>AF035776-1|AAC82329.1| 273|Homo sapiens oxidized low-density
lipoprotein receptor protein.
Length = 273
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 364 PTDTCAYISLGKVLAQRCI--EFGITEMYCDLEPQ 462
P+ TCAYI G V A+ CI F I + +L Q
Sbjct: 239 PSGTCAYIQRGAVYAENCILAAFSICQKKANLRAQ 273
>AB102861-1|BAC81565.1| 273|Homo sapiens oxidised low density
lipoprotein (lectin-like) receptor 1 protein.
Length = 273
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 364 PTDTCAYISLGKVLAQRCI--EFGITEMYCDLEPQ 462
P+ TCAYI G V A+ CI F I + +L Q
Sbjct: 239 PSGTCAYIQRGAVYAENCILAAFSICQKKANLRAQ 273
>AB010710-1|BAA24580.1| 273|Homo sapiens lectin-like oxidized LDL
receptor protein.
Length = 273
Score = 29.9 bits (64), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 364 PTDTCAYISLGKVLAQRCI--EFGITEMYCDLEPQ 462
P+ TCAYI G V A+ CI F I + +L Q
Sbjct: 239 PSGTCAYIQRGAVYAENCILAAFSICQKKANLRAQ 273
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,297,298
Number of Sequences: 237096
Number of extensions: 1975323
Number of successful extensions: 3654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3654
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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