Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d06
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.35 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 582 PWLFRPELIPRVWFFIYFWLL*CNSSLH 499
           P+L  P+ IP     ++ WL  CNS L+
Sbjct: 396 PFLKNPDAIPAFLSSLFLWLGYCNSLLN 423


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 153 RKSKSKKFRTDANSQKTGWISLRETWKE 236
           R S+S++    +   +  +   RETWKE
Sbjct: 38  RYSRSREREQKSYKNENSYRKYRETWKE 65


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 153 RKSKSKKFRTDANSQKTGWISLRETWKE 236
           R S+S++    +   +  +   RETWKE
Sbjct: 38  RYSRSREREQKSYKNENSYRKYRETWKE 65


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 153 RKSKSKKFRTDANSQKTGWISLRETWKE 236
           R S+S++    +   +  +   RETWKE
Sbjct: 38  RYSRSREREQKSYKNENSYRKYRETWKE 65


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 153 RKSKSKKFRTDANSQKTGWISLRETWKE 236
           R S+S++    +   +  +   RETWKE
Sbjct: 38  RYSRSREREQKSYKNENSYRKYRETWKE 65


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 364 PTDTCAYISLGKVLAQRCIEFGITEMYCDLEPQQG 468
           P+D  + I   K LA R I+F    ++C++E  +G
Sbjct: 284 PSDKLSKIQTLK-LATRYIDFLFQVLHCNMENTEG 317


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 622 TH*NNKYLIHHELP 581
           TH N KYL  H+LP
Sbjct: 58  THENVKYLPGHKLP 71


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 543 FFIYFWLL*CNSSLH 499
           F + FWL  CNS+++
Sbjct: 44  FSVLFWLGYCNSAIN 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 543 FFIYFWLL*CNSSLH 499
           F + FWL  CNS+++
Sbjct: 492 FSVLFWLGYCNSAIN 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,245
Number of Sequences: 438
Number of extensions: 4070
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)