Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d05
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.2  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   2.2  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.9  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   3.8  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   6.6  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   6.6  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   8.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.8  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -2

Query: 593 AANNSTSCNIERATQSSPSDGACSMISAITESS-FKSCIALV-----QPGAFGVHPRVLS 432
           +ANNS   N E+     P+   CS I   T S+ F + + ++     QP  F VH  V+ 
Sbjct: 270 SANNSVFVNYEKKYPVKPNS-QCSGIDFFTPSTAFPTHVQILGVINEQPKLFSVHDEVIP 328

Query: 431 DAFN 420
            +FN
Sbjct: 329 FSFN 332


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 631 TAHPELPIALRHLTNLVRSRSSTGSTPGDTAPTSGFAYS 747
           +A   +P+  RH+ + +R+R      P D   TSG +++
Sbjct: 137 SASQGIPLVRRHVADFIRARDGFDCEPSDIYLTSGASHA 175


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 643 ELPIALRHLTNLVRSRSSTGSTPGDTAPTSG 735
           +LP   +H + L    SSTGSTP   +P  G
Sbjct: 58  KLPPPPKHASQLRAGGSSTGSTPRTASPAVG 88


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 628 ATAHPELPIALRHLTNLVRS 687
           A  HP LPIALR L N  R+
Sbjct: 385 ARTHPNLPIALRTLFNKART 404


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 250 NVPSSSLELIHHGKILKDKATLQECG 327
           N+P S  E + H K + D    +ECG
Sbjct: 194 NMPQSDEEAVKHYKFISDHLFEEECG 219


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 529 APSLGEDCVALSILHEVELLAALGANLQTMRR-GATAHPELPIALRHLTNLV 681
           APS+ E+C  L+I    + L  +GA ++  RR GA   P    AL  L  +V
Sbjct: 292 APSI-EECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVV 342


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 278 INSNDDDGTLDRFSASVLRESTVFSSPKFSSL*RSIGPGFTFI--PKNMH 135
           I +N+  GTL R  A +      ++  KF+S  R +   +T+I  PKNM+
Sbjct: 166 IVTNEGFGTLYRGLAPLWFRQIPYTMMKFASFERIVEALYTYIGKPKNMY 215


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 59  LEFIASLIIYRV-ILKGNLNKKWITSHAYFWV*K*NLDQ 172
           L+ +AS+ +Y+  I KG +N K   SH Y +    N+D+
Sbjct: 309 LDLLASIGVYQPHIAKGRVNGKRTLSHMYEFTSTINVDE 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,849
Number of Sequences: 5004
Number of extensions: 64106
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)