Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30d01
         (200 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   3.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   3.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    18   9.8  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 6   NIRGXSRXYYKXKFYHYNILNL*XXSLP 89
           N +  +  Y   K Y YNI+N+    +P
Sbjct: 310 NYKNYNNNYNSKKLY-YNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 6   NIRGXSRXYYKXKFYHYNILNL*XXSLP 89
           N +  +  Y   K Y YNI+N+    +P
Sbjct: 321 NYKNYNNNYNSKKLY-YNIINIEQIPVP 347


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 163 IVXLVFSVCEGSLGLSXXVSIIRSH 89
           I  ++  VC G+  L+  +  +R H
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPH 258


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 163 IVXLVFSVCEGSLGLSXXVSIIRSH 89
           I  ++  VC G+  L+  +  +R H
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPH 258


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 30  YYKXKFYHYNILNL*XXSLP 89
           Y   K  +YNI+N+    +P
Sbjct: 346 YNNYKKLYYNIINIEQIPVP 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,442
Number of Sequences: 438
Number of extensions: 294
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2659293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)