Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c24
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    73   6e-14
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    29   0.52 
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    29   0.52 
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    29   0.69 
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    29   0.69 
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    28   1.2  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   2.8  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.7  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   6.4  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    26   6.4  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   8.5  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    25   8.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   8.5  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   8.5  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 11/145 (7%)
 Frame = +1

Query: 64  GRFPGIVIIIILAEFCERFSYSGMRAFLTLYLR--------SKLGYTDDGATETYHVFST 219
           G  P    III+ E CERF+Y G+      Y++          L   + GA    + F+ 
Sbjct: 79  GTIPWKAFIIIIVELCERFAYYGLTVPFQNYMQFGPKDATPGALNLGESGADGLSNFFTF 138

Query: 220 LVYVFPIIGGILADNYLGKFRTILYMMFVYAAGNILVAITAIPHFALPGRLC--TLIGLF 393
             YV P+   ++AD +LG++ TI+    +Y  G +++  TAIP     G+     ++ L 
Sbjct: 139 WCYVTPVGAALIADQFLGRYNTIVCSAVIYFIGILILTCTAIPSVIDAGKSMGGFVVSLI 198

Query: 394 MITVGTGGIKPCVTAFGGDQF-KIP 465
           +I +GTGGIK  V+    +Q  KIP
Sbjct: 199 IIGLGTGGIKSNVSPLMAEQLPKIP 223


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 631 AQLVREHQKPTNNNLSLRNNVPRIS*WATRS 539
           AQL+R H +  NNN+S++N +  IS   T S
Sbjct: 700 AQLLRLHHEVNNNNMSIQNALAHISSLRTAS 730


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
 Frame = +1

Query: 241 IGGILADNYLGKFRTILYMMFVYAAGNILVAITAIPHFALP----GRLCTLIGLF----M 396
           IG I      G         FVY    I+V I  I   A+P      L  ++ +F    +
Sbjct: 104 IGNIFGQLMFGFMGDFFGRKFVYGKEMIIVIIATILLIAMPKSIHSPLSKMMWVFCWRWL 163

Query: 397 ITVGTGGIKPCVTAFGGDQFKIPEQESHLAAYFSIMYFNLCVGSLI 534
           + VG GG  P   A   ++ K+  + + ++  F+   F    G+++
Sbjct: 164 LGVGIGGDYPMSAAITSERSKLNRRGTLISLIFAFQGFGTLAGAIV 209


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 394 MITVGTGGIKPCVTAFGGDQFKIPEQESHLAAYFSIMYFNLCVGSLIAKTVSPIMRS 564
           ++ +  GG  PC++ +    +K  EQ   LA  +    F+   G LIA  ++ I +S
Sbjct: 141 LLGICEGGFFPCLSLYISMTYKREEQGKRLAYLYVCSCFSGAFGGLIATGLTKIPKS 197


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
 Frame = +1

Query: 241 IGGILADNYLGKFRTILYMMFVYAAGNILVAITAIPHFALPGRLCTLIGLFM-------- 396
           IG +      G         FVY    I+V I  +   ALP  + T +G  M        
Sbjct: 99  IGNVFGQILFGFMGDFFGRKFVYGKEMIVVIIATVLVIALPKSIPTPLGKMMWIFAWRWL 158

Query: 397 ITVGTGGIKPCVTAFGGDQFKIPEQESHLAAYFSIMYFNLCVGSLI 534
           + +G GG  P       ++  +  + + L+  FS   F    G+++
Sbjct: 159 LGLGIGGDYPMSATITSERSLLSRRGTLLSIVFSFQGFGTLAGAIV 204


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 70  FPGIVIIIILAEFCER--FSYSGMRAFLTLYLRSKLGYTDDGATETYHVFSTLVYVFPII 243
           FPGI+ +I+   F  +   S +G+  +   ++ +   ++       +++FS   Y FPII
Sbjct: 103 FPGIMHLIVYHFFLRKDYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPII 162


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 330 CNNCNTAFRSTWKIMHSDRSVHDNSRHGRHKALRDRFWRRSVQ 458
           C    TA   TWK   S+   H+N     +K   D +   SV+
Sbjct: 87  CPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVK 129


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 383 IRVHNLPGRAKCGIAVIATKMLPA 312
           IRV N P   KCG+ +I +   P+
Sbjct: 407 IRVQNAPSLIKCGVCLIISSTTPS 430


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = +1

Query: 208 VFSTLVY----VFPIIGGILADNYLG 273
           +F+ LV+    V PIIGG L  +YLG
Sbjct: 263 IFAALVFDGPLVSPIIGGFLTKSYLG 288


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -3

Query: 699 NIAFGFLYDVFIFCTDEYNYRHKHN*SGSTKSQRITIFLSETMYLGSHDGRHGLRNETPH 520
           +IA  F++  FI  +    Y  K N S  T    + +F+S  + L      HG  NET  
Sbjct: 191 SIAIQFIH--FILASMPTKYIAKLN-SVGTYLNTLFLFISMIVILAMSSKNHGF-NETSK 246

Query: 519 TEIKI-HYTEIRSEMALLFRYFELISSKSGH 430
               I +YT+     A+L  +  +I + SG+
Sbjct: 247 VWSHIENYTDWPDGFAILMSFCGVIWTMSGY 277


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +1

Query: 622 LVVLMSIVIFVSAKNKYI--IKKPEGNVV 702
           LVVL+++V+FV  K +YI  I   EG+++
Sbjct: 14  LVVLLTLVVFVRFKKQYIPTISVFEGSLI 42


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 589 DCYSLAFGAPGLVVLMSIVIFVSAKNKYIIK 681
           D     FG  G++   S+    S KN+Y+I+
Sbjct: 174 DSKECLFGVSGVIAATSLKGITSTKNRYVIR 204


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +1

Query: 208 VFSTLVYVFPIIGGILADNYL-GKFR-----TILYMMFVYAAGNILVA 333
           +FS  + VFPI  GIL    L G F+      +L +M VY A +I +A
Sbjct: 667 IFSIELVVFPIFCGILLSMCLIGTFKKLAAENLLNVMTVYPAQSIFLA 714


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 139 AFLTLYLRSKLGYTDDGATETYHVFSTLVYVFPIIGGI 252
           A  T+Y+ +K    ++   E   +   L  +FPI GG+
Sbjct: 10  ALFTVYIGAKWSAQEEEPEEKQLINKRLAVLFPIFGGV 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,289
Number of Sequences: 5004
Number of extensions: 69719
Number of successful extensions: 188
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)