Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30c23
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    27   0.86 
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.1  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    26   1.5  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   3.5  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    24   6.1  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   8.0  

>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 177 RLRAPMPQLIEPEFKCLNLHIDEVLHVRVQSGKT 278
           R+R  MP+ I P F    +HI +VLH+ + +  T
Sbjct: 138 RVRQIMPKWIYPLFHYFYIHIFQVLHLYLLASPT 171


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 304 VLATKKLSSVFPDWTRTCR 248
           +L+ K L+ + PD TRTCR
Sbjct: 23  ILSMKALARMIPDTTRTCR 41


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  DLINSCPDDIATMLAYTNY 140
           DL+N  P+D   +LA+ NY
Sbjct: 432 DLLNGIPEDTPNVLAFNNY 450


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 155 WK*DKYQQAQGSNATTYRTRIQVP 226
           W    ++ + GSN   YRT+++ P
Sbjct: 198 WSGSNFESSNGSNRRRYRTQMEEP 221


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 102 PDDIATMLAYTNYSSLSFGNEIS 170
           P  +  +  Y  YS++ FGNEIS
Sbjct: 73  PKIMVELGGYLGYSAILFGNEIS 95


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 27  GKERTKMIVKNKMYNQLSVDLINSCPDDIATMLAYTNYSS 146
           G+ ++ +++  +M    SVD +N+    +   + Y NY S
Sbjct: 783 GECKSALLLNGRMICSFSVDSLNTADLKMLMQMEYDNYLS 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,451
Number of Sequences: 5004
Number of extensions: 27153
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)